GgaINT0042861 @ galGal3
Intron Retention
Description
NA
Coordinates
chr6:18629534-18631869:+
Coord C1 exon
chr6:18629534-18629648
Coord A exon
chr6:18629649-18631716
Coord C2 exon
chr6:18631717-18631869
Length
2068 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TATCTTGGTATTGCTTTCAGGAT
3' ss Score
8.19
Exon sequences
Seq C1 exon
TCTGCTAGATGTGCTGGCTGCCAGAAAGGACCCAGCAGGCCTGTCTGGAGAAGTGCTCATAGATGGCATCCCACAACCTCCAAACTTCAAGTGCATCTCAGGATATGTTGTGCAG
Seq A exon
GTGAGTAACTGCCTTCAGTGGAGGCTGGGAGCCCTTAGGAGGGGTAGCATAGCATAGGCTTTGGTGGAAAGACTTTGAAAAATCTCCTCCCTGAGAAGAGAGGAGGGATTCACTGGTGGGAGCTCATCACTGCTTCATGAATGAGAGATGGCGTCTCCTCTGGTGAGCAAGTAGGGCTGTGGTGGGACAGGAGCGGCTTCTCAAGAAGAAAGGTAGAGCTCTGTCACATAAGTTGAGCAAAGCGTGAGCTATTAGTTTAGATAATATTTAATTATCTGTACAGACTTAATTTGGTAACAGATGTTAGTGTTTTTCCTGTGATTTGAAAGGCAGAGGGTCAAACTGCTTACTCCAAGTAAAGCATGAAGGTGTTGGTCCTCCTAAAGCCACATGGGTGTCCAGGCCACTGTGTTTGTTCTCTGGGGCTCTGCCCTGAAGTTCCAGCAATGACTTTAAAAATAAATTAAGTTTAAAAAAAAAAAAAAGTTGCATGGTAGGAACCTCTCAACACCTAAAATGTCTTATAAAACTCTAAAGCAGCCCTAGTTGGCAGAAGTAACTTCAAGCTCTTAGATAATAATTCTAGGAAGTAAGTAGATCCTTGCTGTTCTTCCTCTGATTCTGGCTGGCTGAGGCAGAGCTTTGTTCCACTCGGACAGGAAAAGCCAGCTGAATCTGCGGAAGTGGGTGGGGGCCTGGACCAATAATAGACCCTCAAAGCCCTGGAGAAGCTGAGGATGGGATTCTTGGCAGCTGTATGAACTGCCAAATGTGAAAACCATTCAGACTTCTGACTGCAGGCAGATAGGAAATAGGCAGTCTTTCTGAAAGCTGCCAGCTGAGGGGCTTTTGAGCAGACGCATGATAAGACTGATGCTGAGACTTCATCTCACAGGGCAAAGATCCCTGAATCCTCAGTGTTTCATTAAAGGCCAGGAAGTTTCTTGCAAATGGCTCCAGTTTGAGACATCTGTCTCTCTGTTGTCAAAAGCAAACAAACCAAACCTTGAAATGATGAGCAACTAGGCTAGATGTTAAATGGCTGTTCTCCCCTCCCACCCTTGTGTGCTGTTCCATAGATAACGATGATTCCCTTGATAAAGATGACTCAGAGTGTCAAAACACACCTGAAGGCATAAATGCATACATCTGTTTTATGCAGATGAGCCTATAGACCTGCTAAATCATGTGTTACAAAACTGTTGATGATCTCTTCACTCCTGCCTTGCAAATGAGGATGTAATTCCACAGATTGGAAAGGTACCTGATTAACAGGCATGTTTCTCAGCAGTTGTCCAGTGCTGCATCCCTTCTACCACTATATGGTGGAATGAAGAATTGACTCAAATACCAAAGCAGAGGTGATGGAGAGGCATGGAGCTCTCGATGGAACTACTGTCAGCTCTGTTAGTAGTTGTTCCCGGTTGGCGTAGGCACATGTTTGTCAGCTGGATAGATCTGTTTCGTAGTCAAAATGCACGACTGCTGAAGCTTTGTTGGATTGTGGAATAAGGTCTTGTGCTTAAGAGGAATGGGTATGTGAAACATGGGAAAAAATGTGGGGCATCTTGGTGCAATAGTTTTGATTTTTTTTCTGGGGACCAGGGAGGAGGCTGCGAGGAACTTGTTGGCAGCTGGACTCAGCAGTTGCGTATGACCACAGCAAGTTGCAGCTCATAAGTGGGAACTGAGCAGACTCGAGTGACTCCCTGAATATCTCCAACCTGAATGCTGAGCACTAGCAGTGAAAACTCCCTGCTCTGCCTTCCTATGCCTTGTAAGGAAAATGCAAGATGATGCACTGTGCAGTGTGTACTCTTGAGCCCAAAAGCATGCTGAGGTGGTGCTGGGCACAAGCTGGGAGCCTGTAGAGCTGTGTTTTCCATCTGACTGCTACAGAGTGACCCTGAATTTTGTGTCCTGTATGTTTTGAAACAGGAGTTCTGACTTAGTCCAGTTTTCCCCATGGTCCACAAACAGCTTATCCAGTAACTACCACTACAGGGACTCCGGTGCCCAGTCAGGTAGCTGAGAACAAGGCTTTCACTTATCTTGGTATTGCTTTCAG
Seq C2 exon
GATGATGTTGTCATGGGCACAATGACAGTGAGGGAGAACCTGCACTTCTCTGCTGCCCTCCGGCTCCCCAGCTCCATCAGCTTTCAAGAGAAGGAAGAACGAGTCACACAGATAATTGGCGAGCTGGGATTAAGCAAAGTGGCTGATGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005792:ENSGALT00000040097:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(33.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]