RnoINT0011412 @ rn6
Intron Retention
Gene
ENSRNOG00000039906 | Abo3
Description
histo-blood group ABO system transferase 3 [Source:RGD Symbol;Acc:628609]
Coordinates
chr3:5119657-5121045:+
Coord C1 exon
chr3:5119657-5119713
Coord A exon
chr3:5119714-5120997
Coord C2 exon
chr3:5120998-5121045
Length
1284 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CCTGTGTTCTTTTTCTGCAGCAT
3' ss Score
11.11
Exon sequences
Seq C1 exon
CTATGGATTCCTGAGCCACAAAATCCAGGAATTCAGGAACCCAGGAGGTGAGACTTG
Seq A exon
GTGAGTGAGCATTGAAAAGTGTACACGTCTATTAGTGATATATGTGTCACACTAGTGCATGTGTTAGGTAGATGGGTTACTGGCTGAATGAGCATTCTGCTGTATGCTGCCTTGTGGCTTCTGACTGTATTTCTACATGGATGATTCTAGTCTTTCTCCAGGTCCTCACCGCAGCCTCAGATGCTCCCATAAGCAACTCTAAGAGCAGGTTCTGCTCCCCACACACCTCTCCAGCAGCCTGCTGAGTGCAATGTCTTTTCCCTTCCAGATACAAGTTGGAGACCCTCTCCATCCCTACCTTTCCAGATCCCATCAGTCTGTCTTTTGGGAAGGCATCCCCTGATTTCGCTCTGCTTTCCTAGTTCTGTTGTGGGCTTGTTTCAGTCACACAGGCTTATATGTCTGTCTCAATCCTAATTTCCTTCTAGTATCTAGTGATTCTTTAGAACAAAAGGTAGGAAGAGTTGGATCCTGCCTGTGGATCCATCCACCCTAGCAGCCTACCTCTGTGTTCCTGCATAAGCCATTTATGCTTTTGAGCTGGGGCTCTGGCCTTGACCTTTGACTATGTTGTATTTCTCACTAGACTACACAACCTCTTACCCATTCTTTGTTCCCACTAGTTTCTTCTTGTGTTACCTTTTCATGACTATACAGAACGCTGTCACACCCTCATTTTTGTTAGGAGACAGTCACACCTTTGATGACTCTGTCTTCAGAGGCTCCTATGATTGGCTATACATAGAGAGGTGTGTTTCCCTAGAGATCTCACACATTTCTTGTGGTTGAGTGTGTCTCTAGGCAGAAGCTCCATCTCTGGGCCCTTTCTGTGTAGGTTAAACTACTATTCATCCTGGATAGAAGGTTCTAGACCAGTAATCTATTAAATGTTATCTTTGGATCCCAGAAGCTGTGTTTGAAGTCATCCACTATCATTGCTATTTTAGGTTAAGGGTAGGAATAGACTGCATTTCATGATGGGAAGGGGATGGCAGTCTGCAGTGTTCTGGAACTCCTTTTCTGCTCAGAATCCAGTCAAGAGTATCTTGTGAATGTGGGACAGTAAACTTTGACTGTTGTGTTTGACATTTGTGCCTATGGTGTAGCTGTGTTTGACTTTTGTGTTGTGGGCATAATGCCTGGGGCAATCGCTATGGTGCTGTTCTTTAATTTTAGCAGATATACGCTACTCTCAGGCACCACTGTGCCCTTCCACCAGGGTCTGTGTTCCTGAACCCTAATACTTCTTGGTATAAGCATGCCTCCTGTGTTCTTTTTCTGCAG
Seq C2 exon
CATGGCTACCAGGCAGACGGATGTCCAGAAAGTTGTAAGTGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039906:ENSRNOT00000006553:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(5.7=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]