RnoINT0011414 @ rn6
Intron Retention
Gene
ENSRNOG00000039906 | Abo3
Description
histo-blood group ABO system transferase 3 [Source:RGD Symbol;Acc:628609]
Coordinates
chr3:5122282-5123499:+
Coord C1 exon
chr3:5122282-5122317
Coord A exon
chr3:5122318-5123364
Coord C2 exon
chr3:5123365-5123499
Length
1047 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TTGGATCTCTCCTCATGTAGTAG
3' ss Score
3.75
Exon sequences
Seq C1 exon
GATGGCCTATCCACAGCCAAACGTGCTAACACCCAT
Seq A exon
GTGAGTAGAGTTAGTCCCTGCATGCGTAGACCAGAAGTTGTAAAGCACTAAAGGGTGATTTGCTTGCCTTAGTGGAATAGTTCATTGGCACACCTGAGGCCCTGAGTCAGTCTCCAGCACTGGATAAAACTTAACTCACAAAAACCAAAGACATGATTGTAATTCTCATTGATATCACTTTACCAACACTTTCAGCATCTTAAGGGTATTTGATTAAGTATATGGCACTGAGAATCTCCTTTTACATTTGGGCTTCTGGCCCATGCTTCCTGTCTCTGTCATCAGGAATTTTTAAGAGATGTGGTGAGTGTGGTGATACTAAAATTCAGTTGCTTTCATGGCTGGGGTGAGGGGTTATAATAGCTTGTCATGATGGCATGCACCATCCCAGCAGTGTTTATAGAGGGAAGAGAAAAGTGGATCTAGGCAACTTTCTGGAAAGGCTAGCCAATTAGTGAGCTTCAGATGAATGAAGCAACCAAGTCTGAAGAAAATCAAAGATGTATTCAAATGACACCCAAAGTCATTGAGAGCTGCTTCTGCTTGGCCCAGGTCCTCTGGGAGGGTGATCAGCCCTGGAGGAAGGTGAGGGTTTGGAATCTGAGAAGGGATCCTGCAGGCATGTTTGGTCACATGTTGCCCTTGGATCTCTCCTCATGTAGTAGGAATGATGTTCTTGTCTTCACTCCTTGGCTGGCTCCCATCATCTGGGAGGGGACCTTCAACATCGACATACTGAATGAGCAGTTCAAGCTTCAGAATACCACAATTGGACTGACTGTGTTTGCCATCAAAAAGTAAGCAGCTGGTGTTGGAGAGATGGCTAGTGGGTAACACACTTGCATCAAGGGCAGAAGGAACTGAGTTTGATCCCTAATGCCCTTATACTAGCTTGGCATGGTGGCATGTACCTGTAATTCCAGCGGTGGGGGTAGAGAGAAGAGAAAAGTGGATCCAAGTCACTTTCTGGGTGAGGGTTTGGAATCTGAGAAGGGATCCTGCAGGCATGTTTGGTCACATGTTGCCCTTGGATCTCTCCTCATGTAG
Seq C2 exon
TAGGAATGATGTTCTTGTCTTCACTCCTTGGCTGGCTCCCATCATCTGGGAGGGGACCTTCAACATCGACATACTGAATGAGCAGTTCAAGCTTCAGAATACCACAATTGGACTGACTGTGTTTGCCATCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039906:ENSRNOT00000006553:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(3.6=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]