MmuINT0009148 @ mm10
Intron Retention
Gene
ENSMUSG00000015787 | Abo
Description
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase) [Source:MGI Symbol;Acc:MGI:2135738]
Coordinates
chr2:26845956-26846609:-
Coord C1 exon
chr2:26846574-26846609
Coord A exon
chr2:26846091-26846573
Coord C2 exon
chr2:26845956-26846090
Length
483 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
GTGGCTCTCTCCTCATGTAGTAG
3' ss Score
5.02
Exon sequences
Seq C1 exon
GAATGCCTATCTGCAGCCAAGGGTGCTAAAACCCAC
Seq A exon
GTGAGTAGATTTAGTCACTGCGTGTATAGTGCAGGAGTCCTAAAGCACTAAAGGGTGATTTGCTTCCCTGGGGGAATAGTTCAGTAGCAACCCTGAAAGCCCAAGTTAGTCTAAGGAAAAAAACTAAACTCAGGAGAAACCAAAGACCTGACCTTGCTTCACCAACCGTTGTAGAGTCTTAGGGATGTCTGATTCAGGTCTGGGGCCCAGAGCATCTTCTGTCTCTTCTTTCACATTTGGGCTTCTGCTCCTTATTTTCATTTCTATCATCAGGGATTTTTAGAGATGTGGAGGGTACAGTTGTAGTAACCCAGTTGCTTTTATGGCTGGGGTTGGGGATAGTCAGTAAGAATTGCTGCTGGTTGGTACAACCCCATTCTGGGAGGGTGATCAGCCCTCGGAGAAACTGAGGGTTGGGAATCTGAGAAGGGTCCCTGCAGGCATGTTTGGTCACACATTGCTGGTGGCTCTCTCCTCATGTAG
Seq C2 exon
TAGGAAAGATGTTCTTGTCTTGACTCCTTGGCTGGCGCCCATCATCTGGGAGGGGACCTTCAACATCGACATATTGAATGAGCAGTTCAGGATTCGGAATACTACGATTGGACTGACTGTATTTGCTATCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015787:ENSMUST00000102900:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(4.0=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types