BtaINT0065845 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030319 | GBGT1
Description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:20460]
Coordinates
chr11:103183889-103184776:-
Coord C1 exon
chr11:103184741-103184776
Coord A exon
chr11:103184024-103184740
Coord C2 exon
chr11:103183889-103184023
Length
717 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
TCGGCCTCCTCTGCTGCCAGGCC
3' ss Score
6.9
Exon sequences
Seq C1 exon
GTCACAGTACCCTCAGCCCAAGCTGCTGGAGCAAAA
Seq A exon
GTAGGTGTTGATTAGGGCCTGGGTGCAGGATGGAGAGATTCGAGGGGGTGGGGGTCGGGGGCAAAGCTCTGATTTAGAAGCTGGGGTGCTGCAGGGGTCAGCTGACCTTGGGGTCCGGGCACTCTGGGACCTGGGCTCCAGTCCAGCTTGGTCACCAGCTGTGTAATCTTGGGTAGGTGACCCAACTCCTCTGAGCTGCTTCTATACAGGTGGATGGTTAGTGATACCCACTCGACAGGGCAGAGGACCAGATGAAATGAGGTTGGCAAAATGCAGAGCAGCGATTCCTGAGAGCCCCAGTGGCTAGGACTCTGTGCTTTCACTGCCAAGGACCCTGACTCGCTCCCTGGTCAGGGAACTAAGATCCTGCAAGCCAGGCGACGCAGCCAAAAACAAACAAACAAACCAAAAAAACTGCAGAGCACTGTGCCTTCAGTGCTCGATCCATTATTAATTATGAGAATGCTAACCCCCATCTCCGAGGCCCTTAGCAGACCCCAGAAACGCCAGGCTCCTCTAGACACTGGACGTGCAGTAACTCCTGGTCCTCTTGCCCTCGCTGGGAAGGAGCTATTATCATCCCCACTTGAGGATACGGTGGCCCAGAGACAGGGATAAAGCCGCCCAGGGTCACACAGCGTGGGAGGCAGGACCCAGATGAGACGGAGGCTTTCCCCAGGGGAGGGTCTCAGCCCCCTCGGCCTCCTCTGCTGCCAG
Seq C2 exon
GCCCACAGAGCTACTGACACTCACACCCTGGCTGGCGCCCATCGTCTCCGAGGGAACCTTTAACGCCGAGCTTCTGCATCACATCTACCAGCCACTGAACCTGACCATCGGGCTTACGGCGTTTGCTGTGGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030319:ENSBTAT00000042813:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(3.7=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development