RnoINT0013302 @ rn6
Intron Retention
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5542292-5543124:+
Coord C1 exon
chr3:5542292-5542412
Coord A exon
chr3:5542413-5543043
Coord C2 exon
chr3:5543044-5543124
Length
631 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CTTGCTCTGCTTGTCCCTAGAGT
3' ss Score
10.26
Exon sequences
Seq C1 exon
ACCTTTGGCTGTGATGGCAAGATGGACTCCCAGCAGGTTTGGGATGCGTGCCAGGTGTGTGGAGGAGACAACAGCACCTGCACTTCCCAAAATGGCTCTTTCACAGCTGGGAGAGCCAGAG
Seq A exon
GTAGGCCCGCCAGGGGTGCTCAGCAGTCTGCAGGGACCCAGCACCCAAAGCATTAGCCTGGGTTACTCAGGGCATAGCACCCACATGCTGGCTCAGCGCTGGGTACCTCCCAGTGTATTTCAGTTCATTCTTCTCTGACGTCTCAAACTTCAGCAACGCTGCCCCTGCAACCAGGCTTACAGCACCCCATTAAGTCCCTCACCGTAGCTGTGCTGAGGGGGGAGAGAGAGAAGTGGCAGACTCTGAGTGGTTGTCAGGTCACCCCTTCGTTCCCACTCAGGAGTCCCAGCACGAGGAGTCAGTGGACAACAGGGATGCAGCCTTGACTTTGCTCTGTATATATAAAGTAAAAAATCATTTGCCAGTACTGACTTTCGAGCTCAGCAAAGGACTTGGGCCCTGCCTTTCCCGGCTGTGCCTGCAGCTAAGAACTTTGGGTCTGGTCTATGTTCCTGGCCTGGGCACTGTCCTTGCAGGTAGCCCCGTAGTCTGGTCTTGGCCTCTCCCACGATGGGGATCCATTACCACCAATACCTGGCCAGCGACACTGTTCATGTTTGTCCAGCTAGGCTTGTCCTCTTCGGGAGGGGCATAGGGGACCACGCAACCCTCTTGCTCTGCTTGTCCCTAG
Seq C2 exon
AGTATGTCACGTTCCTGATAGTCACTCCCAACATGACCAGCGCACACGTCATCAACCACAGGCCTCTCTTCACACACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780:ENSRNOT00000007640:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTGGCTGTGATGGCA
R:
AGTGTGTGAAGAGAGGCCTGT
Band lengths:
199-830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]