RnoEX0006793 @ rn6
Exon Skipping
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5542292-5544092:+
Coord C1 exon
chr3:5542292-5542412
Coord A exon
chr3:5543044-5543124
Coord C2 exon
chr3:5543911-5544092
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTGCTCTGCTTGTCCCTAGAGT
3' ss Score
10.26
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
ACCTTTGGCTGTGATGGCAAGATGGACTCCCAGCAGGTTTGGGATGCGTGCCAGGTGTGTGGAGGAGACAACAGCACCTGCACTTCCCAAAATGGCTCTTTCACAGCTGGGAGAGCCAGAG
Seq A exon
AGTATGTCACGTTCCTGATAGTCACTCCCAACATGACCAGCGCACACGTCATCAACCACAGGCCTCTCTTCACACACTTGG
Seq C2 exon
CGGTGAGGATCCAGGACCACTACATTGTGTCAGGGAAGAGCAGCATGTCGCCTAACGTCACGTACCCTTCCCTTCTGGAGGACTACCGCGTGGAGTACAGAGTAACTCTCACTGAGGACCAGCTGCCCCGCTTAGAGGAGATTCACATCCGGGGACCTGTCCGGGATGACATTGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTGTGGAGGAGACAACA
R:
TTACTCTGTACTCCACGCGGT
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]