MmuEX0003822 @ mm10
Exon Skipping
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26986989-26989419:+
Coord C1 exon
chr2:26986989-26987109
Coord A exon
chr2:26988339-26988419
Coord C2 exon
chr2:26989238-26989419
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTGCTCTGCTCGTCCCTAGAAT
3' ss Score
10.08
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
ACCTTTGGCTGTGATGGCAGGATGGACTCCCAGAAGGTTTGGGATGCGTGCCAGGTGTGTGGAGGAGACAACAGCACCTGCAGCTCACGGAATGGTTCTTTCACAGCTGGGAGAGCCAGAG
Seq A exon
AATATGTCACGTTCCTGATTGTTACTCCCAACATGACCAACGCACACATTGTCAACCGCAGGCCTCTCTTCACACACTTGG
Seq C2 exon
CGGTGAGGATCCAGGGCCACTACATTGTGGCAGGGAAGACTAGCATCTCACCCAACACCACCTACCCTTCCCTTCTGGAGGACTACCGTGTGGAATACAGAGTGACTCTCACTGAGGACCAGCTGCCCCACTTAGAGGAGATTCACATCCGGGGACCCGTCCGGGATGACATTGAGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-'14-21,'14-16,15-21=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(10.5=31.7)
A:
PF059869=ADAM_spacer1=FE(21.8=100)
C2:
PF059869=ADAM_spacer1=FE(48.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAGAAGGTTTGGGATGC
R:
GAAGGGAAGGGTAGGTGGTGT
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types