BtaEX6047316 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104391143-104392850:+
Coord C1 exon
chr11:104391143-104391263
Coord A exon
chr11:104391740-104391820
Coord C2 exon
chr11:104392669-104392850
Length
81 bp
Sequences
Splice sites
3' ss Seq
GCTCCTCTGCTTCCTCCTAGAGT
3' ss Score
8.26
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
ACGTTTGGCTGTGATGGCAGGATGGACTCCGGACAGGTGCGGGACGTGTGCCAGGTGTGCGGCGGGGACAACAGCACGTGCCAGCCACAGAGCGGCTCCTTCACGGCCGGAAGGGCCAGAG
Seq A exon
AGTACGTCACGTTCCTGACCGTCACCCCCAACCTCACCAGCATCTACATCATCAACCGCAGGCCTCTCTTCACACACCTGG
Seq C2 exon
CGGTGAGGGTGCGTGGCCGCTACGTTGTGGCCGGAAACGGGAGCGCGTCTGCCAGCACCAGCTACCCCTCCCTCCTGGAGGACAACCGCGTGGAGTACAGGGTCACCCTGAGCGAGGACCGGCTGCCCCGCCGGGAGGAGATCCGCATCCGGGGCCCCACCCGGGACGACATGGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093-'16-23,'16-22,17-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.180
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGCTGTGATGGCAGGATG
R:
CAGACGCGCTCCCGTTTC
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]