GgaEX1006353 @ galGal4
Exon Skipping
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6914932-6916278:+
Coord C1 exon
chr17:6914932-6915052
Coord A exon
chr17:6915744-6915824
Coord C2 exon
chr17:6916097-6916278
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCCACCTTTTCAGAGT
3' ss Score
11.84
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCATTCGGGTGTGATGGCCAGATGAACTCCAAGAGGGCAATGGACTCTTGCAAGGTCTGTGGGGGTGATAATACCACCTGTATGGAAGTGAGTGGATCTTACACAGAAGGAAAAGCTAAAG
Seq A exon
AGTATGTTACGTTTTTGTCCCTGCCTTATAATGCCACCTCAGTCCATGTTATCAATCAGAGGCCGCTCTTCACTCATTTGG
Seq C2 exon
CTGTGAAGGTTAAAGGTGAATATGTGGTTGCTGGAAAGGGAAAAATCTCACTGAATGTCACCTATCCCTCAGTTCTGGAGGACAGACAGATTGAATACAAAGTGTTTCTCACCAACCACAACCTCCCAAGCCTGGAGGAAATCCATGTGGATGGACCAATCCAAGAAGAAATTGAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(10.4=31.7)
A:
PF059869=ADAM_spacer1=FE(21.6=100)
C2:
PF059869=ADAM_spacer1=FE(48.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAATGGACTCTTGCAAG
R:
CTGTCCTCCAGAACTGAGGGA
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]