RnoINT0013308 @ rn6
Intron Retention
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5551318-5551706:+
Coord C1 exon
chr3:5551318-5551447
Coord A exon
chr3:5551448-5551526
Coord C2 exon
chr3:5551527-5551706
Length
79 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CCTTGGCTTTCTCCCTGCAGGTG
3' ss Score
13.58
Exon sequences
Seq C1 exon
GTCTGAAGGAGCTGTATTTCCTGTGCATGGATTCTGTCCTCAAGATGCCTGTCCAGGAAGAGCTATGTGGCTTGGCCAGTAAGCCCCCAAGCCGGTGGGAGGTCTGCAGGGCTCGCCCATGTCCTGCTCG
Seq A exon
GTGAGTTGGGAGGCTTAGTACAGGGGAGGAATCTGACCCCAGGGTTGCTCCCCTTGAAACCTTGGCTTTCTCCCTGCAG
Seq C2 exon
GTGGGAGACTCGAGTCTTGGCACCGTGTCCGGTGACCTGTGGCGGGGGGCGAGTGCCGCTGGCCATTCATTGTGTGCAGCTGGACCACGGGCGCCCTGTGTCTGTACCTCACTCCAAGTGCTGGCCAGCACCTAGGCCAGGCTCCTTCGAGGACTGCAGCCCTGAGCCTTGTCCTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780:ENSRNOT00000007640:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTCAAGATGCCTGTCCA
R:
CAGCTGCACACAATGAATGGC
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]