RnoINT0017315 @ rn6
Intron Retention
Gene
ENSRNOG00000016678 | Angptl2
Description
angiopoietin-like 2 [Source:RGD Symbol;Acc:620004]
Coordinates
chr3:12274524-12288608:+
Coord C1 exon
chr3:12274524-12275389
Coord A exon
chr3:12275390-12288414
Coord C2 exon
chr3:12288415-12288608
Length
13025 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CACACATATTGTGTCTACAGGTC
3' ss Score
9.31
Exon sequences
Seq C1 exon
GCTTTCAGAGACCTCATTCATAAAGACCAAGGAGCACACTGCAAGGACCATGAGGCCACTGTGTATGACCTACTGGTGGCTTGGACTGCTGGCCACCGTGGGAGCTGCTACAGGCCCAGAGGCTGATGTTGAGGGCGCAGAGGATGGTTCGCAGAGAGAGTACATTTACCTCAACAGGTACAAGAGGGCAGGTGAGTCCCCAGACAAGTGCACCTACACTTTCATTGTGCCCCAGCAGCGGGTCACAGGTGCCATTTGTGTCAACTCCAAAGAGCCCGAGGTGCACCTGGAGAACCGTGTGCACAAGCAGGAGCTGGAGCTGCTCAACAATGAGCTGCTTAAGCAGAAGCGGCAGATCGAGACGCTGCAGCAGCTGGTAGAGGTAGATGGCGGCATCGTGAGCGAGGTGAAGCTGCTGCGCAAGGAGAGCCGCAACATGAACTCTCGGGTCACACAGCTGTACATGCAGCTTCTACACGAGATCATTCGCAAGCGAGACAATGCGCTGGAGCTTTCCCAGCTGGAGAACAGGATCCTGAACCAGACAGCTGACATGCTGCAGCTGGCGAGCAAGTACAAGGACCTGGAGCACAAGTTCCAGCACCTGGCTATGCTGGCACACAACCAATCAGAGGTCATTGCCCAGCTTGAAGAGCACTGCCAACGTGTACCTGCAGCCAGGCCTGTGCCCCAGCCACCCCCAGCCACGCCACCTCGGGTCTACCAGCCACCAACCTACAACCGCATCATCAACCAGATCTCCACTAATGAGATCCAGAGTGACCAGAATCTGAAGGTGCTGCCACCCTCCCTGCCCACCATGCCTGCCCTTACCAGTCTCCCATCTTCCACTGATAAGCCATCAG
Seq A exon
GTAAGTCCTTTGGAGAGCCCAGTTCACATGGGCCTCTGAGCCCCTTAGCCTGGGGGGTACAAGTGGGCATGTGAGTCCCAAGACAGTTGCATAATCCTCTAGCAATCTCCTGGGATGGCTGCTGAAGTTGGGTCGATGGGAGCGAGGGACTGCACTGCTTCAATAAGGTGGTAGAAAGTAGAACCCGAAGGCTAGAAGCTTCGGGGGTCAGCTCTGGTCTCTAAGAGGAAAGAACCCAGTCCTGGATATTCTGAGGTTTGCACTTACCCTGTCTTAGTGGCTAGATGTCTAGCCACTAAGTGCCTGTGTTAGCCCAGAGCTATCTGGAAATGTCATGTGATAAGCACCAGGCCAGTGGAAGTGTGCTATTAAGTTCAAAGTTAATGCTTCGCAAAGACTAGGGGACCAGAGGGAAGTTTCCTTTGGTTAGTTGCTGCCTAGTTTTCAAAAAGGCTTCCATACACCCTCAGCACACGTCGTGAGATTCTTGGGACACTGTTATGAAAGAATGGGGTCCTTGGGAGCATGCTCTGGGAAGTGTAACCAAGTCCTGCTCTGGGGTTTTCATGAGGGTCCCTTGACTAGGCCTGCAGCTCCTTGGGGACAGGATGACTGACCTGTTCATGGGCTGAAGATGCTCAGGTGGAGCTGGGCCTCTCTTCAGACACATGGAAACAGAATTACAGCGTCAAAGGAGCACATCATGAAAACAATGTGCTATGATGTCACCAGGGGGTTGCCAACACTGCCTGTGCCCTGCACTGACTTGGTGAAAACTGTGGTCCCTGGTCTCCAGGATCCCCAGTGTGGGGAGGTAGCAGGCGTGAAGACTCTGGCAAACCTTCAGTGGAGGGGAGCAGGCTGGAAGGTTCCTCTCTGGGGCCCAGTTCCTGAGCTAGACGGTGTTATTTTCCGCATGTACTAACTGAATTCATCTCTGAAAAAGCTAACCTAAGACTGTGCATGGGGTACTAACCTCTTTGTTGGCAGGGAATGTTTTTACTGGAAAGATCCTTTATAACTATTTCACACTTAAAAAATCAACCAGTACTGAGCTGAACCTGTGTGTCTGAGGGTGGAGAGCGGGCAGATCAAGGACTGACAGGCCAGTGGGGACTGGAGGAGCTAGGTGTGTAACACAGCATCTGCCACAGCACCTCAGAAGGACTTGGACTGGTGTGGGTGGAGAGCAGGTGTGGGGAGAGGACCAATCTTGTTTCTTCTATTGGCAAGCTTTCGGCAGGAGGCAAGTCACCCTATCCCTATGTTCCGCATCTAAGCCTATGGGCAGGCTTTCCTTCAGTCTGTTCCCAGCTGACAGTTCTAGGATATGAAATACTGCAGAATGTGTGCATGGCACTGGGCCCATGGTAAACTGAGCCTCCTTTGATCACGGTCTTGCATCTTAACCAAGGGGACTGGAGTGGACAGTTTGTCTTCAGCTCTGTGTCCAGGGCCTGATGAGTGTGCCATCTGCACCCACACCTGGTTTACAGCAGAGGTCAAAGGCAGGGTGGAGTGCGTTCTGTGTTCTGACAGAATTCCTAGAGTGGACACTGCCCTTGGGCACCACATGAAGGCTCAGATGTGCTTACAGCCAGGCTGGGTCAGTCAGTCAGACCTCCTTTCAACACAGGATCTCTAGTTTCTAACTCAACCATCTCAGGACATTCCTGAGCTGGAACAAAACTGGGATAAACACCTGGATCTGCCATGGCCATCCCTCCTTCTTATATTTGCTAAGGAGAAAGCTACTTAAATCAGCTGAAGTGCAGCTCAATGTTTGCCCAGCATACACGAAGCACTGAGTTCAATCCCTGGTAATGCGCCAAACCAGGTATGCTGCCATGTGTCTGTAATCTTAGAACTCAAGAGGAGGCAGGAGGATCAGAAGTTCAAAGTCATCCTTGAACTTCTCTATATATGGAGAGTGCACAATAGTTGTTCGTTTTGGTTTTTAAACCCTTCTGAGCCTTAACTTTCTTCATGTGAGGAGACGGGAACAGAGTTACAGCTTCGTAGGAAGATGTCATGAAAACACAATGTGCTATGATGTCACCAGGGGGTTGTCAGTATTGTCTGCGCCCTCCACTGATTTGGTGAAAACTGGTCTCCAGGAAGCCAGTGTGGGGAGTTGGCAGGTGTGTGAAGGTATCTGGAATCTGTCCTGCCTCCAATCACATCTATTCCTCAAATTCCACATAGCAGGTCTGACAAGATTTCTCTGGAAGGACCCAAATTTCTGGAACACTGAGAATTTATGAAGCTAGCATAGCAAAATACCAAGAGTACAGTGAGCGTTGTCTGGCCGCGGTCAGAACACTGCAGAAAGGCAGATGAAGGACTGTGCCATCACTGAAGTAGCATGACCAAGTCCTGCTGGACAGCATGAATGGCTCAGAGATGAACTTCTGTCTTGCACCTTGAAGGCTTTGTAATTTTACCAGGTGAACCAGGGAGTAGGGACACCAAGTTACTAGTTGGTCCCTGATGGCAGAGGGCCCTGCTCCTAGCCTCTCAAATGGCTCTGGCACAGTTGTTTATAACCCAGAGCAGGCTGTGGCATCTGCAGTCTGCGTACCCAAGGCAGCCCCCCTCAGTGTCCATGCTCACTCACTGAGCATGAGAGATAACCTGTGTGTACTCAATGTCTCTCTTTCTGCGTCCACCTCACCAGAGTGTCCAAACAGGGCAGGCAGAGCAGAGAGGAGGATGGCAATGCAAAGACCCTACCTTTCCTGGGTTTGGACTGATCTGGAAGGAAAAATATGGTCTCCAGTACTGAGCCTTGGTCCAACCAATGGGCACAGAGTGCTTATCAGCCCTCTTCCAGCTCAGGCAGGTCTGTTCCTAAAAGACAAAACCCCTCTGTGTTCTCCAAACAGAGCCTTGGCTTGCTGCCACCACACAGCCAGAAACACCTTTACAATCCAACACCTTGCACTCAGCCACACAGCCTCTGGTTTCTCTCTAGGAAGTTCAGAGTCATCAGCCTTTTGTCCCATTGTTGTAGCTGCTCAGGAATCAACACGCCTTCTCCACAAGGTAAAGGCAGCCAAAGCCCCTTAACTGAAGCAGATCGTGACAGGCTGGCCCCGGGGCCAGGAGGTACCTGCTAACAGCTAGAATGAGGGATCCAGGTAGGTCCTAGCCTAGCTCCCTGGCTTCATACCTAGGTCCCACCTCATTCAAGGATGGTCAGACTAGAAGTATTTTGGTTTGAATGGTGCTTACATTGTTGCCTGAGCCAGTGGCCATCCCATGGCCCTCTGCTGTTGGAGGTGCTCACAGGAGCACAGCCCTCTGCTGTTGGAGTGCAGCATCAGAGGCCCTTCTCTAGGGAGCACAGGAAAGGGCAGATGAACTCTGAACTCACCCCAGGCAGCCGCCACTACATGCCAGTCTCTGGTCATAAGACCCACTGTGGAGATGGCTAGGAAGCACAGTACTGCCAGCCACCAGTACTACAGCACAGCTTCCCTAGAAAGATGTCTTTAAAAACCAACAGGCAGCCAGAAGGTGATGGTGCATTCCTTTAATGCCAGCACTTGGGAGGCAGAAGCAGGCAGATTCTGTAAGGCCAGCCTGGTCTATAGAGCGAGTTCCAGAACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAATAACCCCCTAAAACAGAAAACAAAAAACTCGCCTACAACAACAACAAAAACTCCAACAGGCTCAGGCACATCTAGGTATTGCCTCTTCTGCTCAGTGAGTTTCTCCAGAGATAAAGGAAGAGCCCCGATGTCAGAAGACAGAATTGCTAAGGTACCTTGGTCCGCAGCGTGCACCTCCCTTGGTGCAGAGCAGACATGGGTCACTGCACTTGTAATTCCCAGGATCCTCAGGTTCAAAGTTACTCAGCCACAATTACATAGCCCACAATCCAGGGAACACTTTGGGCAGTGTGTGGAAAACCTGCTCTAGGAATATGTGACAGCACTGACCACTACGGGTCTGGCTTCTGTCAGCTTCATGTGTGTATATGTGGGGGTTTGCAGGGACCTTACAGTGTTACACAGACACAGCAGCTACTGCTATGCCAGGCAGAACAAGCCACTCCTCAGTCCTCAAAAACCAGGATGTTTACTCGATGGCCAGGCAATGGGTCTTTGGGAAGCTTCTAGTAGATCTAGCTGTTAGCTCCTGTCAGGTTTGGGCCCATCCTTGGGGCTATATGTTAGCCTTTTCACAGACAGCTGGGCCTAAGGTCACCTTCTCCTTACATGTTATGACCCCCTTCTCAAGGGCCATACTGCTTCAGGGACAACACAATGTGCTAAGAAGCCTCTCACCCTGGGCCTCTGGAGCTGTGGCCAGGAGACGCTGATCAACAGTACTTCCTAGGTAGACTTCCCCATGGCTTTCTGTCACTTGTCCTGAGATGGGAACCATGAATAGCAGACCATGGCTGCCCAGAACAACAGCGTGTCTTAGAACTGACTCAGTTTACATCACAGCACAGAAAAGCTCCCGGTCCCAAGGTGACAGAGCTGGGATGTCATGCTTCAGGCGAGGGGTGACTGGCCAGCCCTGATTTTGACTTCGCTTTTGGGGCTGCGGAGACTGAGTGAAAGCCACCCGGTCTCCTGCCTCTAGACTGTGTCCTCTCCCCTGTATTGTACTTTCTTTTTCTTCAGATATTTTCTTAAATGAGTTAAGATTTCCAAAATTCATTATGGCAGACATTTCAGAGGACATTCCTTTGCAGCTTCTGCCTAAACAAGAACCACCGAGGGGCAGTTCCAGGCCAGCTTCCTTGCACCCCACCCCAGAGGTCTGCTGAACTCATCACAAAGGGCCTTTGAGTGTGACTGTGGCTATCCCTCCACCCCTCAGGCCACGGTCCAAGGATGACAGTGGCTGAAGGCCCCTGCTATTTGTAGGAGATAAACTATCAACTTTGTAACTGTTAGAAGTTGGGCATCTGGCATCTCAGGGCCTTGAAATCCCAACAGTTTGGCATTTGGCAAGCCAGAAGTAATCGAGAAAATCCTGGAGATTGGGCATCTGTGGCCAGCTTGCTAGCTACATAAATGGATCAGTGTGGTAAATTTACAGTCACGGCGGGCCGCCAAACTCATTTTTGAAAAGAGAAAGCAGAACTGAGCTAGCAAGTACGGCCCTGCTGGGTGCCTAGCCATCATGCCCACTGAGCCTGAAGGCCAAGGCCTATGACCAAGGTAATGACAGACACTTGTTAAGGAGGGCTACAGGACCTGTTCACCGAACACTGGAGAGGGTGCCTTCCTGATGGCCTAGCAGCTTCAGTCTCCCTGGGTGACTGGATTGAGAGTGCCTTGACAATACCTGGATCTCAGAGGAGATGGAGTTGCTAAACCCAATCACGTACGTCATCCTTGTTTCCTTTTAGGTCATCCCTGCCCTCTTTAGACACAAAATTTTAAAATTCTGTATACATAGAATAAACTGATAGGAAAATCAAATATTATTTTAAATGACAAAGACAGTAATTAAAATTTTTTCCTTTTATGTTGAGACTGAGGGACCTATATGATTTTCTTAAGAATAGTTTCTAAAAGACCGGCAAAGGCAGCACTACTCTGACACACAGGGCCTCCATTGCACATGGTCTGCTCCAAACATCCCCATAGAAAAGATTTCACTTTTAAGATTTGGTTTGGATCCAGATGACTGTCGGCCATTGAGGTCTCTGTTTTTCGGGCTCTCACACTGAAAGTGATATAGCTCACTACATTCCCGTGAAGAGGAGACAGGTGGTGGCAGGTGACCAGGGACTCACTGCCTGACTCCCACAGGAGCCCATTGCCATCAACTGGGGGACAGATCTCAAACAACCCTGACTGTGTGATAACAAGACAATGGAATGAGGAGCCTGATGCCAGAGGCAGCTCTTAGCAAGAGTCCCAGACTTCTGAGCCTAGGCTGCCTTCGTCACAAAGGCTCTGAGAGGAAATGGCATAGGGGCAGATGTCTGGTTACCTGGTGACTGGCTCTCTGAGACTGGCTGCAGGTGCTCATGCTGTACTCCAACAGAAATACATACAAAGGCTTTTAGGAAGCCTAGGTAGGATAAAGAAGTCTTTTGGGGCTGGGAAAGGCTTTCTAGAGGAGACCAGGCTCTGCAGGGCTGAGGCCCTGCAAATCGGCTCTCAGCCATGGTCAGCAACTATCAGGAAACCATAAAGACCAGGCTCTGTGCTGGGTAAGTGTCCTGTTTCAGACAGAGAAAAAGGCCAAAATGCCACAAATTACATACCAAGTGGCTTGCGGTCCAGTCCCATGGTAAAATGGCAGAACAGAGGATAAAGAGAACCTTGTGAGCATGTGAGAGATAAAAGGTGACAGGAAAGGCCAACATAAGTTCTTTAAGAAGAGCCAATGAAGAGGCCCCCTTCCTCGGAAAGTGTCCATAGGCTGGCTGACCACAGGACCACCAGCCACTTGTTCAGCATTTGTGGATTGAGAGTCCCGGGTCTGATCAATTCTTCCGTGGTGTGTCTGCACTCAACTGTGAGCCCTTCATCCAGTGCCTACCTCACCCAGGCAGCCATGGAAGCTACCAACAGCAACACGGGGAAGGCAGGCTCAACCCAGACCCCTGGAGCACAGAAAGCTGCTCACTTCTACCCAGTAAGGCTTCTAGGACTCTGCTAGCTTAAACATTGTTCTCTTTCTCTCTCTTTTTCCCCTATGGTGTTGGTGGTTGAACCCAGGGCCAGAGAATGACAAGCAAGAGTTCTGTCACTGAGCTCTACCTCCAGCCCCACCCCTTTCCTAAGCTGTTGAAAACTCCCATCTCTCTTACCATTTGCCTGCTGGAAACCCGAGTGGGCACATACTTCCCAGCCTGCAACTAACACTGAACATTTCAGTAGAGCAGTATTATTTATTTTGAGGTCAAACAGGCAGGCTGGGGCCCCTGCAAGCCCTTCATGGGCCCTAAGAGCTCTTGGGAGGCCTGGAGCTGCATCAGATACACTCAAGTACGCTCACCTCACACAGCCAATATAATTTTTACTGTAACAATTTTGAAAGGGGCTGAATAATTCTGCTTTTGAAATTATTTGGCCAGCAGTAACTCAATTAATTTATGGTTGGCTCTGATTTCTCAGCAAACATCAGGCATGCTCGGGAATTCTTGGGAAGTGAGAAAAATCTAACCTACAAATTGTTTCCCAAAGTAATAACATCTTTTATGGAGGTGAAAGTTACCAATCAGTGAATCCAACGGACGGTTGATACACTTTGTAGAAATTTAATCATAGGTTGATAAATTTTTATTTTGTAGTTTTCTTTTCACACCTGCGAACCAGTGAGATTTCTTTATGTCTCAAACATTTTAGTGGACCCCTTCAAGCTCTCTGCCCGAGGCCCTCATGCTGAGGACAGAGTAAGTTCATGTGCACCCTCACTGCACAGAAGAGACAATGCAGACATGCAAACGCTTGGCGGCCTGCAGATCAGCCCTGCAGTTAGACCACTGCTTGTGCTCTTCGTCACAGAAAGGTAGCCATTGACAAGGACAACAATTCTGTCAAACTTCTTGAAAAATGAGACCCAAAGAATTATCAAAGTTGTTCCTCATGTCCTTGACAGGGTCTGACTTCAGGCCTGCCTGTTCAGGACACCCAGGGACCTGCCACTGGCCAGGGTGGCTCTCATACCTACAAAGTACATTTGCCCTGGCATTAAATGGGTACATTTGAGTAGGCCATTCCAGATCCAACTTACTATCTAGTCATTTCTGTTGGTAATAAGACTCCCCGGACACAAGCCATCGATGAGAACTGAAAAGCACACGGTTCTCACACAAGAGGGGTCTTAGTGTCCAGAGTGCCATGAAGACTAAGGCACTCTCAGGAACACTTCCAAGGACACTACCACAGCTCCCAGGATCCTCCATTCAGGCTAAGGCCACCAGGTCCAGAGGCTCAGAGGCTGAAGAGAGCCTTCACTTGTGGCCAGCTCTGGAAGGCTCTGCTCTTACCTCGTCCTTTGGGTGTGCTGGTAGAGGTGCTGTACTCTGCCTGATCAGGACCACTGCCCCAGCTACAGGGCCTGGGTCAACCCGGCTGGTGCTGGTCATCCTCAGGTTACAGAGAAGACACAGAAGATAATACTGCACTTGAGTCTAGCCTGGCTGCTAGCCTCAACTTGCCTTTACCAGGAAAACGACCAGTGAAATACTCCCTGTTCTTCATGGTGGCTGTGTGCTCTGTACCTGTGATGCCTCCATTGGGAATGCCAGAGGAGAGGTCAGGAAGTAGACCACCACCCCAATCAACCCTACATGACTGCCGAGAAACCAGAGCCAACCATAAAGTAATTGAGTTACTCCAGGTCAAATAATTTCCAAATTCCCAGGGCCGATCCCAGGGTACCAAGGCCCAAGGCCTGCATATCTTATGTCTGAGGTGGCCAGCATCCGTCCCCCATCCTCAGCCTCAATCCTGTGCCTTTCCTGCACTGTTGCCTCTCTCTAGGGATCCACATGGATCTGCTTGCCATGGGAGCCGCACTGCTCCCATGTGGAAGAGTCTGACTGTGGTGTAAACATGGTCTGTATAGAGGTGAGCCTGGGTGCCGCCGAGTTAGTGTTGGCCTGGTGCTCCGGGCAAAGCTACCTCTCAGAAGGGGAGCCAAGGCAAACACCACCGGGCACTCGCTCTGTGCCAGAAGATGCTTCGCCCACTGCACTTTGAACATTCAAGTGTACTCAACAGAAAAGATTCTCATTTTCTACTGCAGTGCAGTTCTGTAGCCTCCACTGATTCTGACTTTTAAAATGTGCCTCGTGGAAAATATTAATGAATATAGACACAGACACAGACACACACACACACGCCTGTGTGTACGTGCATGTATTACAATGTATACTTAGTTTTGGAAAAGAGCAAACAGCATGTATATCTCAAGAAAGGGGTTGACCTACTCCAACAAACCAAGCTTGTATCTAAGAGGAGAGAGACGCTATCTAGCCCCTGACCTGAGATCTGCAGGATGGCTAGTGTACTTTCCCTGTGTCACAGCAGTAAAACTGAGGCAGGAACCTGCCGGGAGTCACACTGTGAGTAAGAAAGGCCACCAAGATCTGACCCCAGTGCCTCCGACACAGTGTCAATGATCTTTCTCCAAAACCTGAGTGCTCTGCTTGGCCCTTGTGGCACTGTCCAAGTGTAATGACAACAAATTTGTCACAAGGTATCTACAGTTGCCGTGCTGAACTCTCACTGCACTGGTTATATGTAGCACAGACTGGTCACTGCTCCATCTCTGTTGCATAAAGGCTTCTCATCACAGCAGGGTGTTAGTGGCACATTTTCAATGCAGTCTATAATTTGAACTGATTTCCAGCGTGCAGATCTGTGAAGCTTCTGAGAGAGCCTCAGCTATGTAACAAAGCTGATGGCCTGAGTATTGTACAAACTGCAGGGTGTGTGCAAGGCAGAAAACATGAATGCTTCTACATCATTTCAAACTATTCCACATGTCTAGAAGGCCTTACAGAGGCCAGATTTGCCATATACACACAAAGGAACCTTCAACATCACAGGACACCAAAATAGGCAAAGGACAGAGTAAGTAAATATGTGTTGGGAGTGGGGGTAGGGGAGAAGACAAAACCTGTATTATCAACAAAGACAAACATAAAGGGGTTTAACAACCTGACAGATATACTCATCAGTATGCCAAGACCAGAGCCAGACCCCTGTTCTCAAGGCCACTCTGGCTGGGGAGAAAGAACGGTGCATCACATCAAGCACATTCCAAAGCATATCATTTGAGATCTTAGACCACCCTGCCTTCAAGGGTCATGTAGCCTTGGGGTGTTCCCTAAGGTCTCTGGGTTCTGATTTCCTCATCTGTAAAATGAGACGATTACAACTTCCTACCAGGGGCATGGAAAGACTCAGCAGTGTAAATACCTAGGCAAGGCCTGCCACAGACTGGGGCCACAGCAAAAACCATGCGTGGGCTCCAATGGCAAACTGTTACTCCTGCTTATCCAGACAGGCCTTTCTTAGAGTGAGGTATTCTTGCCTGGGCCTCAAGAATCTACTTACCTTCTGAAGCATATCCAAAATCTGTTTAAGCCTGCATTTTTCTTTCAACAAATTATTTATTGTATATGTGTGTATATATATGTGTGATTATTTGTTTTGTGTATATGTGTTTTTGTACTGTGTATGTGATATTTGTATGTGTTTACACATGTGGGTATGGGTGCATGAGTGTCTCTCTTGTCCATCACTATGGTGGCCAGGCTAGCTGGTCCCCAAACATGAGAGGTCTCCTGTCTCTATCTCCCATCTTGCCGCAGGAGCACTGAGATCATAGGTATATGCCATCACGATGCTTTGCAATGGGGACAGAATTAGGTCCTCATGCTAAACACAACAGGCTCTTTACCTCGAGACATCTCCCAGGCCTTTCTACTAATTATTACTACTAAAAAGATTTTACTACTGAAGACCTCAAATCATTCTAAAATACTTATCTTAAAAAACAAATTTAAAATTAAAAAAAATTTAAAGCCCATTTTCAAGAATGCTAGAGGTGGACTGGAGAGATGGCTCAGAAAGGGCTGGAGAGATGGCTCCGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGATCTGATGCCCTCTTCTGGTGTGTGTGAAGACAGCTACAGTGCACTCATGTAAATATAATAAATAAGTCTAAAAAACAATGCCAGAGGCAAAGCTGAGCTGTGGAAGGCAGCACAGGCTGGTAGCTGTGAGACCAACCTGTCACCTCTCCAGTGGCCTCCTAGGCCTAGTTATGTTGTGCCCCCTTCAAGAATAGCCTGTTTCTACACCTCCCACCCACCCCAACCCCCTTTTCCCCAGGAGCTGGGTGGCTGTGCAGGAAGAGGCCTTGCTGCTAGCTTTGGTGGGAGTTATTCTGTAGTCTCCCTTGCTTCTGTCTTCTATCCCAGCACTCTCGATAAGTGCCTCCCTGTCCTGCTGACCAGTGGAAAACTGGGAGGCCTCCCACGCCACCGGCGCTCTGCTCCAGCTGTCAGGGACAGACTCTCATTCTCTGTCTCAGTCCCTGGAGCTTGGGCCAAAAACAACGAAAACCTTTTTCTCCTTTTTGAATGTTCCTCCTGAAGGTCTAGCCTCCCCTTCCCCAGGACAGAAAGTGGGGGGCAAGGAAAAGCAGAAGTGGCATTAAGGAATAAAGGAGGGAAAAGAGGGAAGAAGGGCAGAGAGGAGGGGGAGGGAGGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGCGAGGGAGGGGAGGGGGAGGGAAGGCTTTGTGTGCTGTGCATTTCTGCACAGGCTGGGTACGTGGGAAACCTGCTTGTTCTGAGTTCAGAGAAAAGGCAGGGGAGTAAGAAGGCCCTAGAGAATGAAGAAGTGCTCTGACTGTCAGCATCCAGCTGAACTTGCACCGAGTCTGACAAAGAAGCAGATGGTTCCTGTTCCTAACAGGTACTTCACACTGCTTGCAGGGCCCAGGAAGGTCCCCAAATCTAAGCTTTAGCCACCACAACAGGCTAGCAGAGCCCAAATGCCAGCCTCTAGGAAGCTGCAAATGGGCCTTTGCAGGAAAAATCTGGTGAACCCACCACCGAGGGCTGCCTCCCATCATAGAGAGAAAGAGGATCACCAGAATCATAGCTTAGAATGCTGGTGAGGCCTGGCCACCAGAGACAGCCTACACCGCCCTGGGTTCTCAGACCCAGGGTAGCCCTTAGGGAATGGAACGCAATGAATAGCTGGCTTTGTTGTTTTTATCTTTGTTTCCTCAGACAGGATCTCATTACCAAGGCTGGCCTAGAATTCACTTTGTAGCAGAGGCCGACCTTGAACTCCCGATCCTCCTGCCACCACCTCCCAAGATGGCAGGTGTGCACCACTACAGTCATGGATTGAATAGTTACAGAACAAACACACAAAGTAGGAAGCAAGTCACCTGTCTAGCACATTTCATCGCAGCCACTCTCAGTCTGAAAGACATTCTGAAAAGCATGCAGCAAAGTATAATGATAATTTTAAACTATAGAGTCTACTAGGTAGGTCTTGTAAAGTTCCAAAAATTTCCTCCAACCACTAAGGAAGACCCTAGCTAGACTAGACCATTGACTCAAGCATGTACCTTCTTGTAATGTGAATAATCTCAAAACATACTACATCATAGAGGAGAGAGAGCCATGGTCAGGGACTGAAAGACACTGCAGCTACAGGCTCCTAGAAGGATTTTGGTGTCACCTGCTAAGGAGAGCCACGGATTAGACTGGCAAAGCACAAAACTGAGCCCAATGACACTGAAGAGTGTGGCCGTCAACAGCAGGCCCACATCAACAGCAGTGCACCCATGGGAATGACTTCTTTAAAAATCACTCACAGAGGGGCTGGAAAGATGGCTCAGCAGTTAAGACATAGCTGTTCTTCCAGAGGTTGTGAGATCAATTCTCAGCAACTACATGGTGGCTCACAACCATCAGTAATGGCATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAGTGTACTTATATACATAAAATAAATAATACATCCTTTTTAATAAAAAAAAAAGCTACTCAAAGAATATCCGCCCAAATGACCTGTAATCTAACAGTTCTGATGAGAAAAGCAATGACTCACCTGCAAACAAGGAAACTCGGGCGAGGAGCCGTGCAGAACTGTTCCCATCCGAGGGAACGACAACATGTGAGGGAGGAAGAGCAGAGGCGGGGTGTGGAGTCCAGGCCTCTTGACTCTTAGCCTGGACTCTCCCTTTTACAGTAGATGACTTCTCAAGCATACAAAATAAAGATCTGCCCTTCAAGATGTGTTCCTTAGCTCTCTGCTGGAGTTTATACCTGTCTAGACTATAGCTACAGTGTAGCCTGGCAGCAGACAGTTGTAACACACACATATTGTGTCTACAG
Seq C2 exon
GTCCATGGAGAGATTGTCTACAGGCCCTAGAGGATGGTCACAGCACCAGCTCCATCTACCTGGTGAAGCCGGAGAATACCAACCGCCTTATGCAGGTGTGGTGCGACCAGAGACATGACCCTGGGGGTTGGACTGTCATCCAGAGACGCCTGGATGGCTCTGTCAACTTCTTCAGGAACTGGGAGACCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016678:ENSRNOT00000022585:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.201 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(29.3=96.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]