RnoINT0017768 @ rn6
Intron Retention
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150604214-150606987:-
Coord C1 exon
chr4:150606926-150606987
Coord A exon
chr4:150604248-150606925
Coord C2 exon
chr4:150604214-150604247
Length
2678 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTTTATTTTTCTTTAATAGTGG
3' ss Score
8.43
Exon sequences
Seq C1 exon
CAACAGGCAAATATTTGAATATGATGGGAAGAGACCAAAAAATTCTGAAAATAGCAATGCAG
Seq A exon
GTAAGATTCCTCATGAAGAATCTCTCTTCGTGGGCCTTCCCTGGGTAGCCATGTAGATGAAGAATGTTTTGATCACAGAGGAGCAATATGAAACGCAAGTCACTGTGGGAATGTCATGTATGTTTTTCTTTATCTCTCAGTCTAAAATGGCGGATTATTTAAGAGATTAGTTAAAGGAAGTTTACTGTCTAATACAGCATTCCTGGGTATGACAATCTTTTCATCGTGGCCCAGAAATCCACTAGAAAAGCGATTTTCAGTTATCACATTGTATGCTTCCTCCGTCCACATTGTAGCAAATCGAGTTTAGCAGAAGAATGGATCTCACAAGAAGTGGATTACTTTATCAAGAGAATGTTATTTTAGTTGTTTAAATTACTAATAAAGTATTGTAACTGAAAGGTACAATTTTCTTTTCAATAATTTTTATCTGTGTCTTCCCTGGATATAGAATTAGAATTGTTCTGTGTATTTTCAGCCTTCAGTTTGGGAGAGAATACCATTGTGTTCCTTTGAATATGTTTTTTTACTAGGAGGCTTACTAAGTATTTTTTTCCAATCAATAACTATGTGTGTTGTGTGCGTGTGTGTGTGTATGGTGTGTGTGTATGTGTTGGCAGTAGAACCTGGGGGCCTTATGTATGCTAGGCAAATGTGGGTTTAAATCCTACCCCCTAATAACTTCAATTTTTAGGGAAGTTTTAGGTTCACAGCAAAATTAACAGGAAGAAACAGAATTTCCCATATACCCTGGGACACCCAGACATGCATAGCTTCTTACATTGAGGTCACCATCTGCCTGAGTACTGAGTAGTGGATACATCTGTGAAAATTGTAACCCAGCTGGGCAGTGATGGTGCACGTCTTTAATCCCAGCACCCAGAGGCAGAGGCAGGCGGATCTCCCAGTTCAAAGCTAGCTTACTTCGTCTACCAAACAGGTTCCAGGACAGCCAGGGCTATTACATAGAGAAACCCTGTATCTAAAAGCAAAAAAAGGGAAACAGTTAACCCTACATTGATACAGCGTTATCACTTCAGCATGTCTAGCTTCCATCACACCTCACTCTGGATCTTGTACATGCTATAGATTCAGGCCAGTTTATGACTTGTGTTTACCACTGTGGTAGTGTAATCAGAATGATTTCACTGACTTGAATATTCCTTGGACTTCACCTATTTTTCTTTTCTTTTTTTTAAGATTTATTTATTTGTTATATATGAGTACACTGTTGTTGCCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCCTTCACCTATTTTTCTCTCTGACCCCTACTTCCTGGCGGCCACTGCTCTTTTTACTGTCTTTCGAGTTTTTTCCTGCATAGTCATGTGTTTCTCCATGTTTGAAACATTAAGTACCAAGGTAATTAAATATAGTCACTTAAGGTATTATTTCTATCCCCCATCCCACCCCTACAATCCCATCACCACACCAGGCCATCACCACACCTCCAGGCCATCACCATACCTCCAGGCCATCACCACACCTCCAGGCCATCACCATACCTCCAGGCCATCACCACACCTCCAGGCCATCACCATCCCTCCAGGCCATCACCATCCCTCCAGGCCATCACCATCCCTCCAGGCCATCACCACACCTCCAGGCCATCACCACACCTCCAGGCCATCACCACACCTCCAGGCCATCACCACACCTCCAGGCCATCACCATCCCTCCAGGCCATCACCACACCTCCAGGCCATCACCACACCTCCAGGCCATTGCCACACCAGCCCTTTTGGTCTCTTCTGTTTTGTAGGGCAGGTACTCCACCATTGAACAAAGCCTCAGACTTGGCCTGAGTAACCTCATGGGAAATGCCAAGACACTGATTAGTTTGTTTAATTCATACCTTGAATGAAATGAGGAAGATTTTTTTCCTTTTACTGGGGAAAGCCAACTGCTGACACAGATTAGAAGCTTGAGCTGATAGTCTTACTCTACCCACTAAGGGAGAATAAGGTCGCACAGTGCTCGTGCATGGTGCTTGTTTGTGATAGGATTTTAATGCTCAACTGCGGTGCTGACCCACACCCTAACACCCTGGGAGAGCCGATCCCACCGTAGCAAAGTAATTGCTTCTGTGATTGTTCCCAGTGCTATCAGTCCGGGAAAAACCCTGCGAGTGGTATGGATTCTGCTATGGTGACAACTGCTGTCAGTCTGATGGCTGTGGCCATAGTACTGGCAGTCTCCCTTTAGGTCTCATAGTGTTTTTTTGTTTGTTTGTTTGGTTTGTTTGTTTTGTTTTGTTTCGTTTTCCCCCACCCTACCCCAGGTCTTAAAGTTTTATAAATTCTGTTCCTTCTTGGATTTGATACATATGAAGGGGAGACAAAGCATTCGTAGTGGATTAGTTACCTATATTAGCATTCATTCTAGGAGAGCCTCTAGGTGTGGTACCAAAGGGAAAGCACTGACGATGACGATGGTGGTGGTGGTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATACCTTATTGTTTTATATTGTTCTCTTGGTTTAAAATATGCTTTTTATTTTTCTTTAATAG
Seq C2 exon
TGGATAATGTTTCTGAAGATGGCTCTTTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717:ENSRNOT00000073562:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]