HsaINT0008666 @ hg19
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27371732-27375538:-
Coord C1 exon
chr10:27375468-27375538
Coord A exon
chr10:27371763-27375467
Coord C2 exon
chr10:27371732-27371762
Length
3705 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTACTTTTCTCTTTAATAGTGG
3' ss Score
8.25
Exon sequences
Seq C1 exon
CAGTCACCAACTAATTTCAGAATATAAAGAAGAAAGGATACCTAAACATTCTTCTCAAAATAGTAATTCAG
Seq A exon
GTAAGACTTCCAATAGTGAATTTCTCTTGGTAATAGTACCATGGATAAAAAAGTAAAAGTAAGGAAGTGTTGATCACAGAAAAGCAGTTTTAAAAATCAGTGTATAAGGTGCATGTGTATTTTTTCTTAATTTCTCTTGGTAATCTAGAATTCAGAATTATTTAAGAAGTTACATGTAGATATTTATGATGCCAAATGGTACTATCTGAAAAAAATTCATTTACTTAATTATCATCCCTAAATTCCTATATGAAATTTTTGTATAAATAAAAAAGGTGTTTAAGTTAGTATGTTATGTGTTTCCTTTATAATTACATTATAATGAACTAGACTTGTTATAAAAAATGGATCTTCTATTTAATTTTTATAATAAATGGTTTGTGTTTATTAAATGAATATTAATTACAGTTGTCCCTTGAGCAACGTGCATATTAGGACTGGTGATCCCTGTGCAGCTGAAAATCTGCACTAACTTTCAAGTCCCCCAAAACTTAACTACTAATTGCCTACTGTTGACTGCAAGCCTTATGATAATATAAATAGTCAATTAACATGTATTATGTATATGTATTATATAATGTATTGTAGTAAAGTAAGCTACAAGAAAGAAATTATGATTAAGAAAATCATTAAAGAAGAAGAAATGTATTTACTACTCATTGAGTGGAAGTTGATTATCATAGAGGTCTTCATCCTGGTTGTCATCATGTTGAGTAGGCTGAGAAATAAGAGGAAGATGAGAGGTTGGTCCTGCTGTCTTGGGGTGGCAGAGATGAAGAAAATCCACATATAGGTGGATTTGTGCAGTTCAAACCTATATTGTTCAAGGGTCATTACATAGTGATTTGGGTCACTAAAAATTAACTATCTTTAAAAGGGGGAACTCAACAGTACCTTTCTGGTACCATAAACAAATGGCAATAAGAACTGCAGAACTTAGCCAGTGTGCACCAATACCAATAGGAAATTATTTTTTAAAGATACTGAATACAGAAGTCAGAAAAACAATTCCTTGTTGAGAAGCACAAGTCATGTTACTTATTCTTATACCAACAAAATCTTATTATTACTGACTTTATTCAGCCTAAGTTGAAATAGAATGAGATACATTTACTTCGTTAGAACAAGATGTGTTCTTCTGGCCAGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGCGGGTGGATTATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGCACACCTGTAACCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGTGTCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAAAAAACAAACAAAAAAAACAAGTGTGTTCTTCTGTCTGCTGAATAATTGTCATGATAACAGTAATCTTGCTAGAATGAAACACTCTGTTATCATTAGCCAAAAGATTATCATAATGAATATTCAAATATCTCAACTCTGCGCTCAACAAATTATAATGAAAGTACAAAAATGTCCAATGGGAGACTCTAAAAAAAAACAGGAAAAAAAAAGTAAGTACAGAAATTTTTTTTTTTTTTTTTTGAAATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATAATGGTGCGATCTCGGCTCACTGCAACATCCGCCTCCTGGGTTCAAGCAATTCTTTTGCCTCAGCCTCCCAAGTAGCCAAGATTACAGGTGCCCGCCACCATGCCCAGCCAATTTTTATATTTTTAGTTGAGATAGGGTTTTACCATGTTGGCCAGGCTGATCTTGGAACTCCTGAACTCAGGACATCTGCCCGCCTTGGCCTCCCAAAGTATTGGGATTACAGGCTTGAGACACCGCACCTGGCCAGAAATGTTTCGCCATAACAAAAATGCTACTATGCTACCTGGATGTGACACCAAATGCATTTTATAATCTGAACTGCATGAAGACACATTTAATTTGGTACATATTTATCAAAGAACTTTCATAGGTTAGGTTTTGCAAGTTGCAAGAAATATGAATATGGAACAGATTAGTTTTGGTCTTCAAAGTTTTCATAATAGAATAGAGCTGTTCTATTTCATTTGTGTTTTTTCAATGAAAGTATTTTAATTGATTTCTATAATTGTTTACTTAGCAAATAACTGTCAAGTATCTTTTAGATACTAAGCATTTTTCTAACGTTACAGAATGCAAACATTTTATTTCTTTTTTCTTTTTTTTTTTTTTTTTGAGATGTAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGTGTGATCTTGGCTAGGCTCACTGCAACCTCCGCCTTCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATCACAGGTGCGTGCTACCATGCCTGGCTACTTTTTGTACTTTTAGTAGAGACGGGGTTTCTCCATGTTGCTCAGGCTGGTCTTGAACTCCTGGCCTCATGTTCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATAACAGGCATGGGCCACTGCACCCGGCCTAGGTGCTATGCAACTTAGGTCATAGCTATGCAACCCTGCCATTGTAATGTGAAAGCAGTCATAAATAATATGTAAGTGAATAACATGACTGTGCTTCCGTAAACCTTTATTTACAAAACCGTATGGCTGGCTGGATTTGGCTTGTGGCCTCTAGTTTGCTGGCCTCTTATATACAGGATAGATGGAAGGTAACCATGTAAAGGGATTGGGAAACAAGGAAGCTTTTGCAGTAGTTAAAGCCATAGTTTTTTTGTCACTAATCCTTGGACTAGTATTTATCCATTATGAGGTTCTCACCATCCATGGTGAAATACATAAAGTTAGGAAGCTCAGTTTATTAATTTTATTTTATTTCATTTTATTTATTCTTTTAGAGATGAGGTCTCACTATGTTAGGCCAGGCTGGTCTCAAACTCCTGGCCTGAAGTGATCCTCCTGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGGCACCATACCTGGCCAGTTTATTTATTTTAAAATGTTGGTCTTTTTCTTCATGTTATAACTTTTTTATTAGTTTTGCTTAAATTTTTTTTTTCATTTAAGAAATAACATTAAGAGTGCATGGGTTTTTTTTCCTTGTGAAAGCTATCAGTTAAGAGTGCATGTTTAACTAGGAAATATAAACATATTAAGTAAATATTATATTAAGTAAATAACACATTAAGTAAATATGTTTATATTTCCAGGAGTAGTGGAAATGTAAGGCAAAGGCAGAAGAGAGGTACAGTTAATAGGATTTAGTGATTATTGAGTGTAAAAAGTTAGGGGGCAGAGAGAAATCTCAGCTGATTCCTAGGTTTCCAGGTTGTGCACAAGCATTTAAACTGGACATGAGGAGTAGGAAATTGTCAGGTGAGTAGAGAAGAGTGGCAGGTCTGCAGGGAAGATTAACTTTTTTCTATACATGTGAGTATAATGGAATATTTATAGAGGATATTAATTCTATTATAGTCTCCAGATATGGTCCCAGAGGGATACTTTGTAACAAACTATCAGTCTTATGCTTTAAATTTTATATATTTTTCTATTGTTGATTTAAAGTGTGTTTTACTTTTCTCTTTAATAG
Seq C2 exon
TGGATGAAAGCTCTGAAGACTCCTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-ANKRD26:NM_014915:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=NA C2=0.864
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)