MmuINT0004588 @ mm10
Intron Retention
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23233853-23240954:+
Coord C1 exon
chr2:23233853-23233890
Coord A exon
chr2:23233891-23240923
Coord C2 exon
chr2:23240924-23240954
Length
7033 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTGTATCTTTTCTTTGTTAGCAT
3' ss Score
6.23
Exon sequences
Seq C1 exon
GAGGACAATGCTTTTGGAGTTAAGAAAGAGAAATCGAG
Seq A exon
GTAAGATCTCTTGGTAATTGTATTCCAGAAGTAACGTCAGAATAGGGAAGTTCTAACTCTAAAAGTTTGCAAAACCATCTGTAAGTTGCCTTTATTTTTTTCTTACTAGTTTAGAGTTTGGAGTTATGAAGAAATTAATTATATGAAATTTTCAACCTGAAATGGCATTGTTTGAGGAGAAAAGTGGACTAATTTTGGCACTTAAAATATTATATGTCCTTTTATATATATAAAAAAGAATCTCAAAATTAGTATATGTTATATTAACCATCACATTGTAACAAAATGGGCCTGTTATAAAATGGGTTTTAATTGTTTATAAGAATATATTGAGCGGCTGGAGTGGCAGCAGCGGCCGGCATGGCGCGAGGCGACGCCAGCAGGCAGCGGCAGTAGCAGGGGCAGCGGCGGCAGCGGGTGCGGGGGGGGGGTGCGGGGGGGCACAGCGGAGGTCGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGACGGACTCGAGGACACGCGCCGCTGCCGCCGCTGGGCCGGGCCGGGTGTCGCGCGCCCAGGCGGGTGGGGTGGGGTGGGGGGGGGTAGGGGGGTGGGGGTGGGGTGGGGTCGGGAGTCGTCGCCGCGGCCAGCGCCGCCTCCGAGGTGACTGAGGAGAGAGGCGCCTCCGCCTCCGCCGGCCTTCAATGTCCAGTCCCCAGCTCGCCAGCGTTTTTCGTTGGAATTTACGTTGTACATTTATGGCGATTCTGAGCGTGAGGGCAGACTTCTGCCAGGCTCAGCACAGCCTTTCCCAGCGCTGACAAGTGAGTTTGGGGTTATACGTGCTATAATTAACATTGCCTTGACGACTCTGGACACCGAGACTGGCCTCAGAAGTAGTAGGCTTTTTTTTTAAATTGCAAGCATATTCTTTCAATGACTCCAGTAAAATTAAGCATCAAGTAAACAAAAGTGGAGAAGAACCTACACTTTTAACTTGTCTCACTAGTGCCTAAATGTAGTGTAAAGGCTGCTTAAATTTTGTGTGTAGTTGGATTTATTTTGGAAGCTGAAGGTATCCATCTGCAGACATTGAGGCTCAAGTTGAATTTGGATTCAAGTGGATTCTTAATACTTCTGCCTGTGCTGAAGAGAGAAGCTTCCTAAGGAACAAGCAAGTTGAATAGAGAAAGTAGTGATCAATAAAAGGCATTTTAGTGGTCGTTTTAATGTTTTAATGTTTTCTGCTGCGAAACATTTCAAGATTTATTGATTTCCTCCTCCCCCCATTTTTTTCCCACCACACTCACACACGCACGCTCACACTTTTTATTTGCCATAATGAACCGTCCAGCCCCTGTGGAGATCTCTTATGAGAACATGAGTTTTCTGATAACTCACAACCCCACCAATGCGACTCTCAACAAGTTCACATAGGAACTTAAGAAGTACGGAGTAACAACTTTGGTTCGAGTTTGTGATGCTACATATGATAAAGCTCCAGTTGAAAAAGAAGGAATCCACGTTCTAGATTGGCCGTTTGATGATGGAGCTCCACCCTCTAATCAGATAGTAGATGATTGGCTAAACCTGTTAAAAATCAAATTTCGTGAAGAGCTAGGCTCTTGTGTTGCAGTGCATTGTGTTTCAGGATTGGGAAGGGCTCCTGTGCTAGTCGCACTTGCATTGATTGAATGCGGAATGAAGTACGAAGATGCTGTTCAATTCATAAGACAAAAAAGAAGAGGAGCATTCAATTCCAAACAGCTGCTTTACTTGGAGAAGTACCGACCTAAGAAGCGATTACGCTTCAGAGATACCAATGGGCACTGCTGTGTTCAGTAGAGGTACAGGAAGGCTGGCTGGATCGTGGCATTAGAGGGAACTCTTGGTACTTGGAAATGTGAAGCTGGATTCTTACCTGTGTCATCAGAGTAGTAATGGATTCAGTACTCCTCAACTCCTAATGATTGAGAAGAAGGCAAACGATAAAGAAATCCCTCTATTACACGAATAAAATGTTTAAGAAAAGAAAAAAGAAAGGAAAGGGGATTAATTTAGTGAATGATGATTTTGCTTCTAGTTTTAATTTCTGCCAGGATTGAATTATTTCAAAATCTCCTGTGTTTTTTTTAAAGCTTTTCCAAAATAGATGTCTGAGGAAAACCAGCAGAATATTAGCCAGTGTGGAGCCAGTTGTTGGGAGCACACACTTCCATTATGCTTGGCACATAGGTCTCCTTGTGGTGGGTGGGATCTGGGGGAGGTAGATTTTCCTCATCTCTCTTCCTGCCTCCCTCCCTTCTCCTGATCCTCCTAGATGGAATAGAAAGCAGCCCTTGTTGCTGTGTTGCTGTAGATGTGCCTGTGTCTGGCAGCCTTAAGCCCACCTGGGCACTTCTAGAAAAAAAAACCAAAAATAAACAAACAAATAAATAAATAAATATAAGAGCAAAAAAAAGAATATATTGTATCACATAGTTGAATATTATTTACTTAGTAATATGTGTCACTAAACATGAATAATGTTAAAGCATGTTGTTTTTGTTCCTGTGTTGTTAGTAAAAAAAACTTGACTTTCTCTGTTTTCAAACTATCCAATCTATACTATAATACTCATTTACTATTTCTGTGGTTTTGTATAATTTTTCTAATAGTTGCACATGAATATACTATATTTTATCAAACACATTCCTATTTTTTCACTCCAATTCCCCACCTGTAACATCCATAATTTTCCCTTTCCAGTTTCATGTGTGCCCTTTCCGTCTTTCAATATCCAACGAGTCCATGTAGTGCTGCTATACATGCATGGGTGTGGTACCATCTACTAGAGATGGGTAGCTTCTCAGAGCTAACATCCTTGAGGAAAACTGACTCTTCCTCCAAAAGAAGCCATAAATGTCAATAACTCTTCAGGTAGGAGTGGGACCTGCATAGGATCAAGTCTGTGATTTCTAAACATCTCCACTTTATGTGACTAACTCTTATGATAATACACAGAAATACTAGGCTGACTAAGTGTATATTTCATTAAAACATCATTAATTTTTGCCAGGGGATTGAGTCCAGAGTCCCACTCTAGGTAAGTGCTGAAACCCACCAGCTACTCAAAACAATTCCATTACAATCAGGAATGAGACAGGGGTGTCCATTATCCCCACATGTTTTCAATATGGTGCTTGAAGAACTAGTAAATATAGTAAAAGAAGAAAAAGAAATTAAAGGCAAATGCATAGGAAAAGAAGTTAAGTTGTTCCTATGTGAAGATGACATTCTATTATACATAAGAGATCCCCAAAATTCCACCAGAAAATGTCTAGAAGTGATCAACAATTTTAGCAAAGTGGCAGGCTACAAAAATCAACTTACAAAGATCAGTAGCTTCTCTATATGCGAGCAGCAAAACACTCTGAGAAAGAAGCATGGAAACACTGCTATTCACAACAGCCTCCAAAACCTGAACTGTCGAGGAAGAACCTCAAGTAAGAAAGTAAAACACCTTTCTAATGAAAACTTTAAATCTTTGAAGAAGGAGTTTGAGGAAGAAACTAAAAAATGGAAAGCCATTTCATGCTGATGGTTTGATAGAATTAGTATTGTGAAATTTACCATTCAACTTAAAGCAATTTGCAGATTTGATGCGAATCCAATATAATTCCCATCTCATGTCTTCCTAGAAAAAAAAAAAAAAAACCCTAACATCCATTTTGTACCACAAAAGGCCCAAATAGCCAAAGTAATCCTGATTCAAGCTTTTTTTTTTTTTTTTTTTTTCTTTTCCCCATTTAGGATAATGTTGGCTGAGTTTTAGATAGAATAGAATGGAAAACCCACCAGAATAACAGCTGATTTCTTAGTTGAAACTTTAATAGCTAGAAGAGTCTTCAGCAGTAGTTGCACACCAAGATCTGAAAGACCATGGATGCCAACATAGATTACTGAACCCAGCCAAACTATCTACCACAGTTGAAGGAGAATGAGAAATTTCCCATGATACAAACAGGCTAAAATATTTCATGCTCACCAAATCAACTTAATACTGAAACTGGAAACAATACTTCAGACTCAAGAGAGAAATGCACATAGCCATGAGAATATAGAAATAAAACAAATGAAACTCATGGAGATTAAACACTCACCACTGAATGATGAGCATATCAAGTAAAAAATCAAGACAAATTTAAAAAATACCTTGAACTAAATGAAAATGAAAGCACAATACAACCAACCCTCTGGGACACATTGAAAGCAGTACTACAAGGGAAATTCATAGCTGTGAGTGCCTGCAGTCAAAAATCAGAAAGAGTACAAATAAACAACTTAATGGTACAAGTCTAGAATTTGGAAAACCCAAAAGAAACCAAACTGAGGTCTAGTAGAGTCCAAAAATGGTCTGTCAGGGTTCCCACAATTAGCTGCTGCAGAACTGCTTGCACTTCTCGAGTCATCCATCTTCTCCCTATGCCTAGCCAATCCCCTAGCCCTGTAAAATGAAAACTCCAGAGGCTTGTCATTTACCAGCCAGATTTATAACAGTAAATCCTCAACTCCCAAAATGCCCACACAAAGAACTCAAAACTCAACTGATATGGACACAAGCTGCACATGTATATTGCTCTACATTACTCACTCATCTGCGAAATCCCTAGTTACTTATGGCTCCTAGGACCATATGGTTCTGGCTCATCATCCTCTCCTTCAGGTACCATTTTGTCTCCCCCATCTCCCTCTCCCTCTCCCATCTCTCCCTCTCCTATCTCCCTCTCCCATCTCTCCCTGTCCCTGTCCCCTCCCCCTCCTCCTCTCCCTCCCTCTCCCCCTCCCCCTCTCCCTCTCTCTGTGTCCTGTCTAAAACTTTTCTGCTCTGCCTTCTGTTTCACTGCCCAATCATAGACTCCAGCCTTATCTGACTAATAAGATTTCACCTGATCTCACCTGCGTACAGACACCCTCTTTGAGTGGAAAATAACCCCCACCCCCCAAAAAAACCCAGATAACAATACACAACAAACATGAGAATAGAAATTAATGAGGTGCACCTTCCCTGCATGGGGAGAGCTTGACTCCAGGGAGTGCTCTGATCCCAGGAATCAGGGGAGATTGCCATTTTCTCTCTGGTGACTCTAAGGCAGGCCTACTCAGGATGGCACAGGCCTCAGAAGCAGCAGAGCAGCTGGGGCAGGGTCCTCTGGGACTACATCTGCACCCAGGAGGTGGGGCTGTTCTGCAGACCTCTGTGCACCGGTCTTGCTGGAAGAGAGCTGGTCTCCCAGGAGTGCTAACACAGGCGTACAGACTCCCAGGAGGAACAAGCTCTAGCCAGAGACAGCAAGAACATCTAACACCAGAGCTTACCAGATGACAAAAGTCAAATGCAAGAATCTTACTAACAGAAACCAAGACTACTTAGCATCATCAGAACCCAGTACTCCCACCACAGTGAGTCCTGGATACCCAACGCACTGGAAAGGCAAGATTTTGATTTAAAATCATATCTCATGATGATGGTAGAGGATTTTGAGAAGGACATTAATATCTCCCTTAAAGAAATGTAGGAAAGATCTTCTGCCTGAACCCAGCAGAGGCTGCCAAGAACCCCAGAGGACTCCACACCGCAGGACCTCAGGATCACCTCAGGATCACGGGTGAGTGGAACACAACATCAGCTCCAAAGAGGGTCTTGTGCCAGCAGGAACAGGGACAAAGAAACCCTGCCCGATCAGAGGCTGGGATCTGTTCTGGTCAGGGCAAGCCCCACCATCTTCCGAGTGAACCCAGCCGAAGGCATCAAGGGCCCCAGAGGACTCTCCATGCCACAGGACCCCTAGCACACCCAGAACCTCGTGATCACTGGAGAGCACGTGGGCTACAGAAGCAACAGAGCTTCATGGACAGGGTCCCTTTGAGTCTTCATCCTCAGCCAGGAGGCAGAGCTGAGACCCAGACCCCTGGGCACCTTCCTTGCCAGAGGAGAGTAGGCCTACAGGTAGGGCTCTGACCCCAGGACTCAGGAGGTAGATCAGAGGACACCTTCCCTGCAAGAGGAGAGCTTGCCTGCAGAGAGTGCTCTGACCACTGGGACTCAGGAGAGAGATGGACTCCCAGGAGTGCTGACAGAGGCTAACAGAATCATAGGAGGACCAAGCTCCAGCCAGAGACAGCTACAACATCTAACATCAGCGATTACCAGATGGTGAAAGGCAAAGGTAAGACTCTTACTAACAGAAACCAAGACCACTCGGCATCATCAGAACCCAGTACACTCATCACAGCGAGTCCTAGATACCCCAACACACCCGAAAAGCAAGACTTGGATTTAAAATCATATCTCATGATGGTGGTAGAAGATTTTAAGAAGGGCATTAATAACTCACTTAAAGAAATACAGGAGAACACTGCTAAACAGGTAGAAGCCCATTACCACAGTGACACACTTCTTCCAGCAACCATACCTGCTCCAACAAGACACATCTCCATCTGGGCCTGTGGGGGGCATCTTATTTTTATTTAAACCACCCCAGATGAGCCCTTGTCCTGTGTTTTGTTCTACCGCACAGTGTAATGACCAGGCGGTAGGCTTTCTTGTGATAAGAGCATTTTACCTTCAACTAAATAGTTTGGGTGAATTTCTAAAGAGATTAAGTTGTGTCAAGACAAAAGAGAATTAATTTCTTCTTAGAGTTATTCCTTATGTAATTAGTTTAGAAAATTAAGCTGTTTGTATGACACTGCCAGTTTATGGAAGAAACTAATTCTACTAATGGCACCATGCTCTGTCAGTCTTTTGTGCTCAGCTGGCATTGTGGTTGTGATACATGGCAATCTACTGGAAAGCATTACATTTTGACATATTCCATTTTCTTGTATACAATAGTGATAAGGAGAAATAACCTTTAAGACATCACTTGCTCATAAGTAATATAATTCATATTGACAGTAGAATGTTCTCACACTCAATACTGCACTTTTAATACTTAACAGTATTATTTTATCTACACAAGGTAACTTGTATCTTTTCTTTGTTAG
Seq C2 exon
CATTTCAGAGTTCTGAAAACTCTTCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774:ENSMUST00000028113:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(19.1=100)
A:
NA
C2:
PF127962=Ank_2=PD(1.5=9.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types