MmuEX1002105 @ mm10
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23233853-23240954:+
Coord C1 exon
chr2:23233853-23233890
Coord A exon
chr2:23239445-23240103
Coord C2 exon
chr2:23240924-23240954
Length
659 bp
Sequences
Splice sites
3' ss Seq
CATTAATATCTCCCTTAAAGAAA
3' ss Score
4.77
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAGGACAATGCTTTTGGAGTTAAGAAAGAGAAATCGAG
Seq A exon
AAATGTAGGAAAGATCTTCTGCCTGAACCCAGCAGAGGCTGCCAAGAACCCCAGAGGACTCCACACCGCAGGACCTCAGGATCACCTCAGGATCACGGGTGAGTGGAACACAACATCAGCTCCAAAGAGGGTCTTGTGCCAGCAGGAACAGGGACAAAGAAACCCTGCCCGATCAGAGGCTGGGATCTGTTCTGGTCAGGGCAAGCCCCACCATCTTCCGAGTGAACCCAGCCGAAGGCATCAAGGGCCCCAGAGGACTCTCCATGCCACAGGACCCCTAGCACACCCAGAACCTCGTGATCACTGGAGAGCACGTGGGCTACAGAAGCAACAGAGCTTCATGGACAGGGTCCCTTTGAGTCTTCATCCTCAGCCAGGAGGCAGAGCTGAGACCCAGACCCCTGGGCACCTTCCTTGCCAGAGGAGAGTAGGCCTACAGGTAGGGCTCTGACCCCAGGACTCAGGAGGTAGATCAGAGGACACCTTCCCTGCAAGAGGAGAGCTTGCCTGCAGAGAGTGCTCTGACCACTGGGACTCAGGAGAGAGATGGACTCCCAGGAGTGCTGACAGAGGCTAACAGAATCATAGGAGGACCAAGCTCCAGCCAGAGACAGCTACAACATCTAACATCAGCGATTACCAGATGGTGAAAGGCAAAG
Seq C2 exon
CATTTCAGAGTTCTGAAAACTCTTCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774-'6-10,'6-9,7-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(19.1=100)
A:
NO
C2:
PF127962=Ank_2=PD(1.5=9.1)
Main Inclusion Isoform:
ENSMUST00000028113fB4969
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types