MmuEX6099285 @ mm10
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23233853-23245125:+
Coord C1 exon
chr2:23233853-23233890
Coord A exon
chr2:23240924-23240954
Coord C2 exon
chr2:23245077-23245125
Length
31 bp
Sequences
Splice sites
3' ss Seq
TTGTATCTTTTCTTTGTTAGCAT
3' ss Score
6.23
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAGGACAATGCTTTTGGAGTTAAGAAAGAGAAATCGAG
Seq A exon
CATTTCAGAGTTCTGAAAACTCTTCAATCAG
Seq C2 exon
GCTTATCAACAAAGCTGATGCTGAAGTGACCTCACCTACGGCAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774-'6-11,'6-10,8-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.441
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(19.1=100)
A:
PF127962=Ank_2=PD(1.5=9.1)
C2:
NO
Main Skipping Isoform:
ENSMUST00000028113fB4969
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAATGCTTTTGGAGTTAAGA
R:
CGTAGGTGAGGTCACTTCAGC
Band lengths:
77-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types