RnoINT0023453 @ rn6
Intron Retention
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88959731-88960323:+
Coord C1 exon
chr10:88959731-88959848
Coord A exon
chr10:88959849-88960151
Coord C2 exon
chr10:88960152-88960323
Length
303 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TGCCCCCCCCCCCCCCCCAGAGC
3' ss Score
11.28
Exon sequences
Seq C1 exon
TTTGACTTTGGCGACACCATGGTCCACCAGGCCATCCACACCATTGAGTACTGCTTGGGCTGCATCTCCAACACTGCGTCCTACCTGCGGCTCTGGGCCCTCAGCCTGGCCCATGCAC
Seq A exon
GTGAGTGTGCTCTCTCCAGTCCTCTCCTCCGGGAACCCCCTTAGAGCGGTGGGGCTTCCTCTGCATGGAAGTACACGAAGGTTCTAGAATCCGTCCAGCCCTGTCTCCAGGAATGAGTGCAGATAAATCATGTCATGAACTCTCACTCAGGCTAGCTGTTTGTAGTGATCCTGCCCAAAGCAGGCAGGGATACAGGGCTCAGGGCACTTACCACAGAAGTGCTGGAAGAGCCAACTTCGAGGCTCACACCCCTTCCCTTTGGCTAAACTCAATTGCACCTGTGTGCCCCCCCCCCCCCCCCAG
Seq C2 exon
AGCTCTCTGAAGTACTCTGGACCATGGTGATCCACATCGGCCTGCATGTCCGGAGTCTGGCAGGGGGACTGGGGCTGTTTTTCATCTTCGCTGCCTTTGCCACCCTGACCGTGGCCATCCTGCTGATCATGGAAGGCCTCTCAGCCTTCCTCCACGCACTGCGATTACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814:ENSRNOT00000055238:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGACACCATGGTCCA
R:
AGTGCGTGGAGGAAGGCT
Band lengths:
270-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]