RnoINT0023468 @ rn6
Intron Retention
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37373844-37376260:-
Coord C1 exon
chr12:37376142-37376260
Coord A exon
chr12:37374055-37376141
Coord C2 exon
chr12:37373844-37374054
Length
2087 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
CTCACGCGCTTCCCTTGCAGGCA
3' ss Score
11.01
Exon sequences
Seq C1 exon
ATTTGGAACCTGGCCACAAATCGCCTCACGTTCCTCAACTCCTTCAAGATGAAGATGTCTGTGATTTTAGGAATTTTTCACATGACCTTTGGTGTCATTCTGGGAATATTTAACCACTT
Seq A exon
GTAAGTACGTGTTTTGTTCTTTTCTTTCATGTTTTCTGCTGCCCTCCCCTTAGGGCAGTTCCCTTCCGCTCCCCAAGAATTGTGTTCCGGGTGTAACCAGTGTGCCTGGCCCACAGTTCTGATGTCTGTGCCTGTAAGCAGATTTTGTCACTCTCTCTTCCTTCTTATTTATTTACTTACATATCTTTTATGTTTATTTGTGAGAGGAAGAAGATGGTGTACATCACTCTCCATGTGTGTCCATGTGTGAAGGTTAGGGGACAACTTTTGGGGTTGGTTCTCTCCTTCCACCATAAGTGAGTCCTGGGGATTGAACTCATGTCCTCAGGTTTGGTAGCAAATGCTTTTACCCAGTGAGCCACCTCTCCTCTACCACCGCCCTCACCCCCTTTATGCATGTATGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCACACTTGTGTGAATATGTGATTGTCAGAGGGCAGTTTGCAGGAGAATTTTCCTTCTACCATGTGGATCCTGAGGAATGGACTCAAGTTGCCAGGCTTGGAGGCAGTTGTTTCTACCTGCTAAGCCATCTCAACAGACTTTTATGTTTTGGGGTGTTTGTTTATTTGTTTGTTGTTTTTTATTTTAACTGTATGTGTGTCTGGGCACCATGTGAGTGTTTGTTGCCTGTGGAGACCAAACAGGACATCAATCAGAGTCCCTGAAACTACAGTTGTGAGTGTTGGTGATTAAATCCAGGTCTTCTCGAAGATCAGCCAGTGTTCTCAACCACTGGGCCATCTCTCCAGCCCTAAGGTTTATTTCTTGACGCTCGACTGTTGGCTGCTGAACCAGTGGCAGTTGATGTGGTGGTGCAGGGTCGGATGTGATTCTGTTTCCGTTACTCAGCTTTGTGGTTTCGAGGATCAGTGATTTATCCATCCAGTGCACACTGTGGGCTGGTGCTGTCCTGGGCTGCAGGCTTCTGCAGACAGGAGAGAGGCCTCTGGCCTCCTGGAGCTCCTGTCCAAGTGTGGCGTGAATGCCGGGTATTCCCAGAAGGGATTTGTCATATTCCTTCTTTCTGTTCTAAAGTAGAAAGCTTTCTGTTTTGTGGGAGAGTCAGCACCTTGGCACTTCCTCTCTGCCCTGACCGTCTCTTCTCATGAGGAAGCATGTGGCCCATGCCTTTAACCCCAGCGCCTGGGTGGATCTCTGTGTCTTTGAGGCTAGCTTGGTCTACACAGTGAATTCCAGGATAGCCAAGACTACACAGAGAAACCCTGTGTGGAAAAACAAAACCTGCAACAAAATGAAACCAAAAAGAAAAGAAAGAAATTGTTGAAAGCGTTGAGTGCTAGGAGCTGCAGAACTGGGTAGCATGTGTGCTGTTCTTGCAGAGCGCTGCACGAGAACTCTGTTCTCAGCACCCTCGGTGGGTGCTCACATGTCTGTAGTTCCAGCTCCACAGAGAGGCGATGCCCCTGGCCCTGCAGTCAAGGCACAGCCACCCATACATTCCCCTACACACGCACGCACACACAGACACACATGCATACAATGCACACACATGCACGCACACGCACACATGCATGTGCACACACGCACACACACACATGCATGTGCACACACACACACACACACACTTTTTTAAAAGTTGAGAAAATCAGAGGAGTCTGGAGAGCCAGCTCCGTGGCTAAGAGCTCTTGTTGCTCTTCTAGAGGCCCTGGGTTTGGTTCCCAGAGCCCTCATGGTGGCTCTCACCTGGCTGTGGCTCTAGTTCCAGGGGAGCTCTCGCCTCTTCTCACCTCTGTGGGCACCAGACATATGGTCCAGCAAAACATTCAAACACATGCAATTAAATAAGTTGAGAAAATTGATTTCATTAAGACAAATTGGTTTAATAATTTTAAAAATAACTAATAGTTTAGAGCCAGTAGCAAATTGTGTTTGCGTGTGGCTCTGCGTAGTTCTCGCTCTTCCTCTCTCTCTCTCTGCGGATGGCTCTGCAGCCCTGGCTCACAGGGACGCATGCGGAGCCCTGAAGTGGCCCATGGCGCTGTACACAGGGCCTTTCAGCTGCCTCACGCGCTTCCCTTGCAG
Seq C2 exon
GCACTTCAGGAAGAAGTTCAACATCTACCTGGTCTCGGTCCCCGAGATCCTGTTTATGCTCTGCATCTTTGGGTACCTGATTTTCATGATCATCTACAAGTGGCTGGCGTACTCGGCAGAGACCTCCAGAGAGGCCCCCAGCATCCTCATCGAGTTCATTAACATGTTCCTGTTCCCGTCCAGTGAGACACACGGCCTCTACCCGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704:ENSRNOT00000083401:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]