RnoINT0024219 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70299980-70300924:+
Coord C1 exon
chr7:70299980-70300078
Coord A exon
chr7:70300079-70300770
Coord C2 exon
chr7:70300771-70300924
Length
692 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
3' ss Seq
TGTGGGGGTGGGGACTGCAGGAT
3' ss Score
1.05
Exon sequences
Seq C1 exon
GACTGCTATATCCTGGACCAAAGTGGCACCAAGATCTACGTATGGAAAGGCAAAGGAGCCACCAAGGTGGAGAAACAGGCGGCCATGTCCAAAGCCCTG
Seq A exon
GTAGGAGCTGCAGATGTGCGATGCTGACTGAGTATCTGTCAGTACCACAATAGAGCTGTGCCCAAACACGCCAGGCACTTGAGCACAGTGACATAAAGAACTTCAAAGTAGACAGACTGACTAGAATGTGAGTGTAGGCTTTACCTTTTCCAGCTGAGTGTTCTGGGCAAGGCCACTAAGCACCCTGAGCTCCCGATATCTAACAGGGATGGTCCCTGTCTCCCGGAACCACTGTGAGATGAAACCGATTCCTGAAGTGCTCAGAACCATACTCGGCACACAACCTGCTCTTGGAAGGTGCTGTTGTTATCGAAGGGGGTGTCACATGTCTAGATTAGGGCCAGGTCCTCAAGGGGCATTTACTAACTTCTGTAGATCCAGCACATGGTGTGTTTACAAGGAACAAGTGAGCAAATAACTATGATATAGTCAGTAGAGGCGCACAGTAGGTCCCGCAGAAGTCAACCCATAATGGCCATCGTCGTGGCCGTCTAATGAAGAGATACTGAAGTGTTCGTGTCTTTTGGTGGTAGTCACTTGGAACCTCAGACGTGAGGCAGAATAGGCTATGATCCCCAGGGTCAGAGAGGAGAGCATCCCACCACCTGACTTCAGACAGTGAAGTACCAGATGGGCGAACACCCAGTAAGTGCCCTGGCTGACATGCTTTTGTGTGGGGGTGGGGACTGCAG
Seq C2 exon
GATTTCATCAAGATGAAGGGTTATCCCAGCAGCACCAACGTAGAGACCGTCAACGATGGCGCAGAGTCGGCCATGTTCAAACAGTTGTTCCAGAAATGGTCGGTGAAGGACCAGACCACTGGCTTGGGGAAAACATTCAGCATTGGTAAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.0=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(33.3=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCTATATCCTGGACCAAAGTG
R:
ACCAATGCTGAATGTTTTCCCCA
Band lengths:
246-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]