MmuINT0022348 @ mm10
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:127008961-127009882:+
Coord C1 exon
chr10:127008961-127009059
Coord A exon
chr10:127009060-127009728
Coord C2 exon
chr10:127009729-127009882
Length
669 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
3' ss Seq
GGGGGATGTGGGGACTGCAGGAT
3' ss Score
-1.09
Exon sequences
Seq C1 exon
GACTGCTACATCCTGGACCAAAGTGGCACCAAGATCTACGTGTGGAAAGGCAAAGGAGCCACCAAGGTTGAGAAACAGGCGGCCATGTCCAAAGCCCTG
Seq A exon
GTAGGAGCTGGAGATGTGTGACGCTGACTGAATATTCTGCCATTATCGATATAGACATGTGCTCAAACATGCCAGGCATTTGAGCACGGTGACACATATGAGCTTCAAAGTAAACAGGACTGCCTGGGATATGAGTGTAGGTTTTACCTTTTCCAACTGAGTGTTCTGGGCAAGGCCACTGAGCACCTCTGAGCTTCAGTTTCCCAATATCTAACAGGGATGAACCCTGTCTCCCAGAACCACAGTAAGATAAAACCAGTTCGTGAGGTACTCAGAACTGTACTGGCACACAGAACCTGCTCTCAGAAGGTACTGTTGCTATTAAAGGGGGTGTCACATGTCCAGATGAGGGCCCGGTGCTCCAGGGGCATTTACTAAATTCTGTCGATCCAGCACGTGATGTGCTTACAGGGAACAAACGAGCAAATAACTGATACAGTTAGTAGAGGCGCATAGTAGGTTCCTGCAAGATCAATCCATAATGGCCATAATTGTGTCAGCTTAATGAAGAGACACCAAAAAAGTGAGTCAGAAATTGGCAATGATTCCCAGGGTCAGAGAGGAGAGAATCCCACCACGTGACGTCAGATGGTGAATTACCAGATGAGCAAACACTTAGTAAGTCCCTGTCTGACGTGCGTGGGGGGTGGGGGGATGTGGGGACTGCAG
Seq C2 exon
GATTTCATCAAGATGAAGGGATACCCCAGCAGCACCAACGTGGAGACCGTCAACGATGGCGCAGAGTCGGCCATGTTCAAACAGTTGTTCCAGAAATGGTCGGTGAAGGACCAGACCACGGGCTTGGGGAAAATATTCAGCACTGGTAAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432:ENSMUST00000026500:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.0=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(33.3=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCTACATCCTGGACCAA
R:
ACCAGTGCTGAATATTTTCCCCA
Band lengths:
246-915
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types