RnoINT0026487 @ rn6
Intron Retention
Gene
ENSRNOG00000002073 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr14:3432187-3438541:-
Coord C1 exon
chr14:3438191-3438541
Coord A exon
chr14:3432316-3438190
Coord C2 exon
chr14:3432187-3432315
Length
5875 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GTAATTTTTCCTTAACTCAGGGG
3' ss Score
5.34
Exon sequences
Seq C1 exon
ATTACAAAGGGTGTGAAGAGGAGGGCGGACACAACAACTCCTACCACTTCCTCAGCTAAAGCAAGTAGTGAATCCCCTCCGCCACTGAGAGAAGCGAAGCCGGCGAATGCGCCAGTGAAGGAAAACACAGTGAAGAGCGTCCTGCCAGACTCTCAGCAGCAACACAGGGTTTTAAAAACGGTCAAAGTAACGGAGCAGTTGAAGCACTGCAGCGAGATTCTTAAAGAAATGCTTGCCAAGAAGCATCTGCCGTACGCATGGCCCTTCTACAACCCTGTGGACGTGGATGCTTTGGGACTCCACAACTACTATGACATTGTCAAAAACCCCATGGATCTTGGAACGATCAAG
Seq A exon
GTAAATACTGCCTGAGTGGGAAGAGCTTGCTTTCCTTGTCTTGATTGTAAAAGTGTCCCATCATTGCAAAGAAATCGGTCCAATGTCCAGGAAACTGAAGACAATTACATCAGAGTACTAACACTGAAGAGGACATTGGGACGCTTTAAATACATCTTGCTTTCCTGTAAACACAGCCATCTCACGAGCTAGTGGAGATTGAACTAGGGCCCTCAGTAATCTTACACAGCATCTCCTGGCCCTGGCTCTCTTTAAAGCATGGCTTTGTTTCATTATTTTTATTAATATAGTAAAGTTTGTTAACTTGCTACTAAACTTTGTGTTTGCCCTCGTTTCTTGTATTCTGCTGTCTCCCTCCAGGTTTGTACTGTTAGTTAAAATTCAAAATCAGTGGTCATTTTTGTTGATTTATAGACCATAAACTCAGTTTTTACATAGACGGTCATTTTCTCTCAACACTTGGATGACGTTCCAGCATCCGTTTGCTGTCATTGCTCCCACATGGTGTGTCCTCCTCTCTCCAGCCGGCACTTGTTTATATGCACCCTGTACTGGGAGTTAACCTTTTCAGTGTGAGGATCCACGTCATCAGTTTTTAACTGTGACATCTTAAAAGAGTACTGTTTTATTTTTCAACACACATAAACTCAGACCCACAGGTTAAAGAGTACTATCTGGCCAGGCAGTGGTGGCTCCCACCTTTAATCTCTCAACACATGGAAGGCAGAGGCAGGCAGATCTCTGAGTTTTTCAGCCAGTCTGGTCTACAGAGCAATTTCCAGGATAGCCAGGACTACCCAGACAACCCCTGTCTCAAAGCCCCAGACAGACAGACAGACAGACACACACACACACACACACACACACACACACACACACACTCTCTCTCTCTCTCTCTCTCACACACACACACATACACACGGAGAAAGAGACAGAGACAGAGACAGAGAATGTTGTCTGAATAGCCATACGTTGGGATGTAAGTAAGAGTCTGTGTTTAGTGTATCTCAAGGAGAGAAAGTAACTTGCAGAATAGTCGTGAGGTAAAGAAAACAGTTCCGAGCACTATCTTAGTACTTAAAGCATAGGCAGGATGTGAGGGAGACGCAGGGGAGGGCACGGTGGGAAGGAGGGCAGGTCCTAAGAAAGCTGCTGCAGAGAAACAAGATCCCTGTTAAACATGAGAGTCTCGGCTGACTCAGGACTTGTGGTGTTTTCTCTGGGAGCTGGGTACATACCAGCTAAGCTGTCAGAGGGTTCCTGAAACAGGAAGGTGTGGACTTTAATTCAGCTCTGAAATCATTCTCATTTGTCACTAATGTGCCTGGTAGAGAGTACACTGGAGACAGAGTGATGCCTCGGTGTTTAAAGCCCTGTGTGCTCTCGCAGGGGACCTGGGTTCAGTTCCCAGTGTCCACGCAGTGGCTTACAACTGTCTTTCCTGGAAAGTTTGAAAAGACCCATCCCTTGCCTGCCTTTTTGGATACCTGGCATACACACGGAACACCAACATACATGCAAAGAAGATATATAAACTTTTAAAAGAATCAGGAGGCAAACATAGGGTAGATCTCTGAGTTCAAGGCCGTCCTGCTCTACATAATAAATCCCAGAGAAATCCTGTCTCAAAAAAGAACAAAACAAAATGGTGGGTACATCCTGTATCATCCAGCCTGGCTCATGACACTTGCCTGGTGGATGCTGGGATCCATGCACCATTACACCGGACCTTGCATTTCTTTAATTTAAAACGAGCCTCACATAATTCGCCTGTTTGTTGGTCTGTGGGTCGTAACTCACATCCCTGTTACTCTTACACTTCTAAAGTCTTTTCATCGCTGTCTCACTGTAGACTTTCCATTTCAAGACAGTCTGAAGTGCTTTCCAGTTGATTTTGCCCACAATGCGCCTTTCATTCTCTTTACTTGTAAATGCTCATTGATTTCTTTTGTACATGTAAAATTTGATAATATAGAACAATGTTTGACATTTGTTTAAAAAATGCACATAATGGTGTCCCCCCCTCCCTTCTTCCCTGCCCCACCTCTTTCCTCTCTCCCCCTCCCTCCTCCCTCTCTCCCTCCCTCCCTCCCATTTGCTTACATTCTGGTTAGCACACAAAGAGGTGGGTTCCTGTGACTCTTTCCTTTGTTTCCCTTTGCTCGTTTGCTTGTTGAGACAGGCTCTCATGTAGCCCAGGCTGGCCTCCCAGAGCTGGGTTACAGAGATGCACACTGTGTTGGCCATGGCATTTCTGTAATATACATCACTATACTTCGTTCTTGTCTGCCACCCCCATGGCTCCTTCTGCCGTGTTCATCCCCGTTATTCCCATTGATAGGACCCTCTTTCCTTTGAAACATACACTATTACCTTCTGTCGGTCCCTTTCTGCCACCTCTTTACTGCTCTTTCTACTTTCATACTGCACATACAGCTTTACATATATGTACATGCTGCATATATATACACACAAATGTGCAAAAATTTAAATCTAGATCCCTCACATAAGAGAAAGCACTTGTCTTCCAAGTCTGTCTTATTTCACTTAACATAATTTCAGTTCTGTTTTCCTACAAAACTTAGATTTCATTCTTTCTTAGAGCCGAGTAAAAATCTATTATGCATGTGCCACATGTTCATCAGTCATCCGATGATGAGCACCTCAGGTGGCTTTACATCTTGTCTGTCATGCACAGAAATGGCAGCAATCATGATTCGCTGATTGAGAGTCCTTTGTGGACTTAGATGAGATGCAGGACCATGTGGGGCAGTTCTCTTTTGCATTTTTAAAGGACACCCCATACTGATTTCCAGAGAACCTAATATAGATTGCCATTCTCACCAGCAGTGTATAGAGTACCATTTTCCTGTATCTTCCCCAGTTTATGCTGGTTTCCCCCTCTTGATATTATCCATTCTGACTGTGGTAAGATAGAAAATCCACGTAGTTTTTTATTTTTGCCTCCTAAGATAGATAAGGATATTGAACACTTTTAACTGTCCATTGGCCATTTGCGTTTCTTCCTTTAAGAACTGCCTATTACATTCACTAGTCTCCCTTATTTTAAATGATGTGGTTTGTTTGCATGTGTATATGTACGTGACAAATCTCTATAGTTTCTAGCACTAATCCTCTTGTGGTCTAGTTTATAGTCATTCAAGACTTCCATCCATCCATAGGCTGTCTCTTGATTCTGCTGATGGTTTCTTTCTGCTACATGGAGTTTTTAATACCAAATAATACAACTTATCAATTCTTGTTTTTTATTTACTGAGCTGTTGGAATACTTTCCCTCCCCTCCCGCACAGGATCTCCTTTTCATTATTGGTATACTGGAAAAAGCTACTGGTTTTGTTGTTGTTTCTGAACCCCGCTGCATTGCTCACAGTGTTTGTCATCCCCGGAGGTTTCCATGGAGGCGTTAGGACCTTTTAAGTACAGCGTCACGTTATCTACATGCAGGAGCTCCGACCCTCTCTTCCGTGTGCCATCTTTCTTTCTTTCTGTGCTCTCACTGCTCTAGCTGGATTGAGTAGGAGCAAAGAGTGCGCTCCCTTGTCCTAGTCCTGACTTCAGTGGAGGTTCATTTGTCCCCCATGCACATAAAGCTGCCGTGGCTTTGTTGTCTGTGCACCTTAAATGTTGGGCTGTCATCTCCTTATCCTTAGTTCAGGGATTTTACCATGAAAGAATGTTGGCCTTTGTCCAAGGCCATTCTCCATTCTCAAAATGATAGTGTAGACTCCTCCTCCTCCTCCTCTGTGCTTTCCCTGGGTCACTGGCTGTCCTCTGCAGGTCTGTGGTCCACTTCCTTCCCTTGTTCCCCTGGTTTTAAATCTCCCGTAAGGTCACTGATCACTTTTACTAGTTTACGGTTTAAATCTTCATCCAATGTTTTATTCCATCCCATGTCTTTGAATTCAGTAGCTAAGGAAAGGTATGCTCTTTTTGGAGAAGTCACCTTGCTTTCTCGTGGTTTTGGGAGAGTGTGGGTTTCTGTGTGTTGTGTACATTTGTTTGTTATCTCTCCTGGTTTAATTTGTTTTTTTTGTTTTCTTAAGGAATAGCTATGAACACCATTAAAACAAGAGAAAATAACTTTTTAAACATGAGATATAGAAGTACAGTGAAAATTGATTAACAATCACTAATATACCATTTATAGTTGGGAAACAGAAAATGGCAGAGGGCCAAAGTTTAAAACAATGATTAAATATAAAACCAGCTAAAGAATAAAGCTATGGCAGGGAGGAGAGGAAGAGGGAAAATAGAAGCAAGGATAGAAAAAGAGAAACAGGGAAGGAGAAGAATCTTCTGAAGGAGAAAATACATAGTAGTGGGAAAGTAAACATGGAAAAAATTACTCGATAACGAGACAATGTAAAAAGTTATAATGCGAGGGATGAGAAGAGGAGAACACGAGAGCTGGTTTTTAATACATAAATCAGGTAAGATCAGCCCTAGTGGAAGCACAATAGGAAAACATCAAAAGGGAGACTGAACGGAGACAAAAATGGATTATATGAAAATAAATTTTTAAAATGAAAGCTCTTCCTAAATTGGAGAGATGATGGGCATGGAGAGGTGGCTCCCCAGGTCCACTTGCAGTCAGACCTGACAGCCTGAGTTAGGTCCCCGGGACCACATGGGAGAAGGAGAAAGCTCACTTCTATGGCTGTCCTGACCTCCATAAGAGAGTCGTTGCGCACACATACACATGGCACAGCTTGGGGAGGGGCAGAGCAAGAAGACAAAGTTTTGACTTCTTCGTTGTCTCTTCCAACTTGGAGATGGCCAGCGACATGCACAGGTCAGCTGACTTGACGCCTCCACTTTAGCTATGCCTGCAGTTGTATATCGGGTCTGTGCTGCTAAGCTGTGGCCTATGGACTGGGCAGCTTCTCCTGCCCTCTGGAAGATCCCTAGTTTCAACCCTTGGTACAGCTAATATTCTGGCCAAACAGTTTCTTACAATGGGAGAAGGCAAAGCAACCAAGGGGCTGAAATCTGCAGACGCAGCCCTGCCTTCAGTTTCAAATGCACAACATTCATTGGTCCCTGCTGGGGGTGTGGCCACAGGCATGGGCATGTCTGTTGCAACTGCAGAGTTCTTGGACCACAAGCATGAACCTCCTGGCAGGTGGGTGGCTCTGCCCATTGACCTCAGGCTTGGGGTGTCAGCTCTAGCCAGTTGGTTGGTGAGGCTGTCTCCAGGCCCCTAGGTATCTTCTACCCTCATGGCCCAGGCAAGACTCCTGTCTCTTGTCCCTTTGGTTTGTCGAGTTCTTGCCCATCTGCTCCTAGACTTATCATTCACATTGGGTCTGTGACAGATTGAATTCAGGCTCAAATGGGACCTAGGCTGCAGCCCTCTGAGCCAGGAGATCTTTCTCCCTCTGCCAATCCCTCCTGCTCAAAAGGTCACTGTCTCAGCCAGGGCCACAGCTGGATTTGAGGCCTGTGAGAACTGTGGATAGAACCACCCAGTGTCTTTCTCACTGGGGATGCCTGGCTTGTCTTTTGGATGTAGTGGACTTCTTCCTCAAGTAGGAAGCCATAGTGCTGGCCCTGCGTCTGGCTTCGGGCTCTCTTTGCTGTTCCCCATCTTGTTGCCCACCTGTTTTTCCATATTTCTAAGCTGCCCATTTACGAATTTTCAAAATTCTTCCTTTTCTCTGGGATGAAGGCTTTTTAAAAGTTTTTTTTTTTTATTCTCCCAACATGCATAGAGGCAAATGTCTAGGCCATCGTCTTACCCAGACATTGGAATATTTTCTCTGTGTTATTTTCTCCGTTTCCCAGTACATCTCATTCGTTTCATGTGAATTGACTTTAGTTGTTTGTGAACCTTTGTAATTTTTCCTTAACTCAG
Seq C2 exon
GGGAAAATGGACAAGCAAGAGTATAAGGATGCGTGTGAATTTGCTGCAGATGTCAGGCTGATGTTTATGAATTGCTACAAGTACAACCCTCCTGATCATGAAGTTGTGACCATGGCCAGGATGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002073:ENSRNOT00000061538:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.487 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(52.8=40.2)
A:
NA
C2:
PF0043920=Bromodomain=PD(44.9=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]