BtaINT0026823 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047443 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr3:51577029-51579671:-
Coord C1 exon
chr3:51579318-51579671
Coord A exon
chr3:51577158-51579317
Coord C2 exon
chr3:51577029-51577157
Length
2160 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TCTGTAATTTTTTAATTTAGGCA
3' ss Score
7.93
Exon sequences
Seq C1 exon
GTTACAAAGGGTGTGAAGAGGAAAGCAGATACAACAACTCCTACAACTTCAGGAGTTAAAGCAAGTGGTGAATCTTCCCCAACACTTACAGAAAAAAAATCAGGGAAAATGCCACTTATAAAAGAAAATATGCTAAAGAATGTTTTGCCGGATTCTCAGCAACAATATAAAGTTGTAAAGAATGCTAAAGTAACCGAACAATTAAGGCACTGTAGTGAGATTCTTAAAGAAATGCTTGGAAAGAAACATTTGTCATACGCATGGCCCTTTTATAATCCTGTTGATGTTAATGCTTTGGGACTCCATAACTACTATGATATTGTGAAAACCCCAATGGATCTTGGAACCATCAAG
Seq A exon
GTAAATGTTGTCTTAATAAGAGGAACTTCTTTTCTTGACTATAAAAGTAATCTTGTCATCATAAAGAAATTTAAAATTCAAAAAAAGATAAAAAATCACCAGTCATACCACCTGAAGTAAATGATGGGAACATTTTTTAAATAATGGGAACATTTTAAAGTGTATCCTCTTATTTTCTTCAAGCACATTCTTGGTTATTTTATCACAGTGTGTGTTATAGAATGTAATATAACTCTGTACCCTAAACTTTCACTTTGTAGATATTTTATTGTTATATATTTAAAATATTTTTAGTTTGCATAATTTTAATACAAAAAAATTTTTTGGCAAGGCATTTATGTGGTTTCCAATCCTCTGCCAGGTAAGTTTTCTTTATTGCTGATTTGGAAACTTTAAATTACTGGAAAAATTTAGTTATGTATATTTATTTTAGGGAAACTACTAAAAGAATAGAACTATACCATTTTCAAAATGATGCATTATCTCAGTGCTCTTCCTAAATAACTACTCATTGTACTCCCTGTTCTTTATTATTATCTGGAAGTTTGGTTCTTCTTTTATTAAATAAACACAGTTTTGTTTTATTTCATCATCAACATTTTTTGTGAACATGTTACTAACTTTTGTGCTCACCCTTATTTCTTGCTTATTACTCTTTCCTGTCTTGGTTTTTCTTTTTGCTGAAGTGCAAGCTTTAGTGGTTCATCCATGAGCATTTATAGGTAGTAAACTTAATAGTTTTTTCTCTGAAAGTATCTGTGCTTTGTCTATTCTTGAATGGTTCCTTAACTAACTATGGCATTCTAGACCTAGTTATTTTCCCCCAGCACTAGGACAGTATCTTTTGGCATGTTTTGTTGTTGCTAGGAAGTCTGCTATCAGTCTGCTTGTCATCCCTTTGTAGATAATTTCTTTACTCTCTCCAATTGTGTGTTTAATTTTACTCTTCTTGATCGGAAATTAGTACTTTCAAGGTGAAGCTCATTTTTTAAGTTCTGAAAAAACAACTAACCATAATCAGTTCAAAATACGCTTTTCTACTTTCCCCTAATACTTAAACTAATTCAGACTGACAGGTCATGAAACAGTACCTGAAATAGGTAAACCTGAGCTGAGTCTTAAAGGGAGGACTTAGTAAGTTACAGGACATTTCAGGCAGGGGAAGCAACTTGGAACACCCTGAAGTAATAAAAAAAGAAATTCCAGAATACAATATTTAAGCCAACATGAATGTAATATGAAAAAGTGATTAGGAGAAAATGAGTCTGGAAGGAAACTAGGACTTGAAAAGCCCTCATCGTAAAGGCCTAGAGCTGGCGTTAAAGGTGAGGATTATGTCCTCATATTTGTTTCCTATAATGACTTCTCTAGTAACAATGTGAAGACTGGGCGATGAGGCTATTAAAGAATTCCAGAGATAAGAAGATAGTGACTTTAATTTAGTTCTTTGAAATCATTCCAAATTGCCAGTGATCTGAGTGGTAGAAAATTATGCTTCTTATTTTAGTTTTGTGTTTTTTTAATTACAAATAAAGTCTGGCATACTATATTTGTTTATTGGCCTTTTGTATTTGTTCATAGATTTTATGTTAATATACACTTGTTTTGCCCAGCAGTTTATAGGATTTTCTTGTCTGATCATTTTTCATGTTATAGTAATGCCTAACTGGCTACTCTACATCCTTCCTCACTGTTCTATCCACTTTCTATGCAGCTACCTAAAAATATAACCCATCCTGATATTTCTCTTCTGTTCAGTTTTTAATGTCTTTCCATTCCCAGGAGAATTTTAATATTATAAACCCTTCATTTAGATGTTCAAGGCTGATTTAAGGAGTTTATTTACTCATTGTTTTGCTACAATCAAACTAGTCTATCCTAGATTATCTGGAAACACTCCATTTTTCCCCTGCTTTTGTGACTTTTTTTTCTGTTCTTTTCTTTACTTGGAATGTCCTCCTTCACGTCTACTTGTCAAAATTCATTGGATCTTTTTCAAAGTCTAAAAATACAAAACATGTAGCAGAGTTTTAATTTTGTCAAATCTGGATGGTGGGTATCTGGTTTTGGTATTACCTATTATTCTATTGTATGTTGGAATTATTTTATAATATAAACACTTAACATAGGTGCTCAAAATTCTGTAATTTTTTAATTTAG
Seq C2 exon
GCAAAAATGGATAACCAGGAATATAAAGATGCATATGAATTTGCTGCAGATGTTAGATTAATGTTCATGAACTGCTATAAGTACAACCCTCCAGACCATGAAGTGGTTACAATGGCAAGGATGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047443:ENSBTAT00000004850:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(52.8=39.8)
A:
NA
C2:
PF0043920=Bromodomain=PD(44.9=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]