RnoINT0026400 @ rn6
Intron Retention
Gene
ENSRNOG00000007681 | Brd3
Description
bromodomain containing 3 [Source:RGD Symbol;Acc:1308925]
Coordinates
chr3:6006676-6009580:-
Coord C1 exon
chr3:6009209-6009580
Coord A exon
chr3:6006805-6009208
Coord C2 exon
chr3:6006676-6006804
Length
2404 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CATCTTGTTGCTTGTTACAGAGG
3' ss Score
6.73
Exon sequences
Seq C1 exon
AAAAAGGGCGTGAAGCGGAAAGCAGACACAACCACACCCACAACGTCCGCCATCACTGCCAGCCGGAGTGAGTCTCCCCCGCCACTTTCAGAGCCCAAGCAAGCCAAGGTAGTAGCCCGAAGAGAGAGCGGGGGTCGCCCCATCAAACCTCCCAAGAAGGACCTGGAAGATGGTGAGGTCCCACAGCACGCGGGTAAAAAGGGAAAACTGTCCGAGCACCTGCGGCATTGTGACAGCATCCTCCGGGAGATGCTGTCCAAGAAGCACGCTGCCTATGCGTGGCCCTTTTACAAGCCAGTGGATGCCGAGGCACTGGAGCTGCATGACTACCATGACATAATCAAACACCCCATGGACCTTAGCACAGTCAAA
Seq A exon
GTAAGTGGGGTGGCATGCAGGGCAGGGTGGTGTCCATGGCCAGAGTCGGTAGGCTCTCTCTGGCCCTGGTGCCCTGTTTGGCTGAGCTGCACTCTGTGTGACCTCCTTCCAGTCCTGTTTTGCTGATGCCTCTTGGCTCTTGAGAGCTGGGCCTGCCCACACCCTGGCCTGCAGGGACCAGGACCTGTTAGCCTCTGAGTCCGCATCTCCATTGTCATTTATTCTGGTGGATCATAGATCGGTGGTTCAGTTCTTTCTGTCTCACAATTCCGTATCACCAGAAGGGGGCTCTTAATGGTCTCTGCTTCGGAGGCTAGTGCAGAGTCAGGTAGATCTCTGTAAGTTTGAGATTTACAGCCTGGTGTTCAAAACAAGTTCCAGGACATTCAGGGCTACATGAACAGGCCCTGTCACAAACCCCTGATGGAGAGAGATGGACAAGGAACCAAGGCCACAAGCTCGGTTGTACCATTTCCCACACCAGCACTTCCCAGAGTCTGTGTCTTGTTCGGGTTTTTGTCTTGTCCAGCCAGGTCAGGGCCTGGCGGGTGTGAGGTGAGGTGAGGTGCTGTTTGAGTTTCTGTGAGAAGATGATCTTGGGAGATGATAACAGACCCAGAGCTGGGCTTGGCTCTTCCCAGAAGGAATCTCTATGCTAACTCCCAAGATTTCCCCTCTCCACTTGAGGCAACCAGATCGTTGCTTGGTTCATCCAGGCGTCCTTTCACAGGCAGTGGCCTCAGCTGTTGGACCTCATCATGTCTGAAGCAGAATCTCCCAGGTGAAGCTTTTTGTCCTAGATGGTAGTGAGTATCAGGGACAGGATTAGGAAGGCCTGGCCACGTAAAAAAGTGTAGCCTGTGCTCATTTGAGTAAAACAAAATGAAGTAAGCAACTGGGCCTGTCCAGCATGGCTGGGGTGAGGAGAAGGGCCCTGGGAACCACATCATCCCAGAACTGCCGGAGGCCTTGGTTAACTGCCTGGCCACCGCTGTGCAGTTGTGTGGAGTTCTGGAACTTTGCTGGGGGTTCCAGTGGTTTGGCTGCACTGGGACAGGATAATTGTGTTTGGTCGCCCTGTCCAAGATGAGGCAGCTGTGGGAGTTCGGTTCACTGGGAAGTCACCATGTGCTTTGTCCAGGCTTAGAGAGAGGCTGTGTGCTTACCCAGGTGAAGCCTGTGTGGCTGAACCTGACTGGCACAGCCTGTGAAGAGGCTGTAGCAGACGAGCATGCGACTGCGGCTGTACAGCCAAGGAGGGAGCACTGAGCATGCTGTGGGTTTAATTTTTGTTTTAGATTGTGTATGTGAGTGTTTGCCTGCACGTGTGTATGTGCGCCATGTGCATGTCTGCTACCCACTGAGGTTAGAAGGTGCTGTTGAGTACCCTGGAACGGGAGTTACGGGTAGCTGTAAGCGGCCATGTGGGTGATGGGAACTGAACCCACCTCCTCTGGAAGAATAACAATTGCCCTTAAGCACTTAACTGTCTGTCTAGCACCCAGTACAGTATAGATTTTAGTGACAAAGCTTCAGAGGGAAGTTGTCCTGGCATGTATCATACCAGCTCCAGGAATTGTCTCAGCATGTGTGATACCAGTTCCATGAGGCGTTTCTTCAGGCCGCCATTTCCTGAGACATGAGTGTCTTTGGGCACAAGGGCCAGGACTATTATTGAGATCTGTCCACTGTATAGGAACTCACATCCAGTCAGGGGGTGGGGTGGGTCCTTGGCCCCTAGATCACTGACTCTTCCGCACTCCACACAAGGCAGGAACCCCACATCCTCATAAGCAGCGTAAAGAAGACCAACCCAGTCCCCATCAGTCTGCCCTGCCCAGCTTTGTGTGCCTGTGTGACCTTGCCCAGCCTGCCTCTGCTGGGACTGCTGGGGCTAGACAGCGGTGGGGTTTGAGGGATTTTGCTCCCGGGTGGTCCCTGTGATTGTCAGCATTGGCTGCACAGACCTGTACCGCCCTACCCTCCACCCCTGCACAAGCTCAGAGCTGCCTCTGGTACCAAGACACAATAAGCAGGTTGGTAATAGCTCCTGGATTCCTACCAGGAAAAGCAGAGTCTTCTGTGTAAACTGAGTGGGCTTCCCAAGATTGGGATTGAAATTCCCCTAGAGCTCCCAACCCCAGAACCTTCTGCCATAAATGCCATGTGAACTGGAAACTCTAAATGAGGATGGGGTTGGTGTGGGCCTTATCTCCCAATCTTTCTTCCATTCATTGACTCTGTCCTTGAAGCCCAGATGTTTCTTGTTGATCCTCTTATCCCTTCCCTGAGGGCTCCCTCCTCTAAGGATCCCAAGCTAATTGCCAGAGGCCCTGACTGGGATGCTCTGAGAATCTAAGTCTATGCCCTGCAAGGTCTGCTCACATCTTGTTGCTTGTTACAG
Seq C2 exon
AGGAAAATGGACAGCCGTGAGTACCCAGATGCACAGGGCTTCGCTGCCGATATCCGGTTAATGTTCTCCAATTGTTATAAGTACAACCCTCCAGACCACGAAGTGGTAGCCATGGCCAGGAAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007681:ENSRNOT00000065867:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.653 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(52.8=37.9)
A:
NA
C2:
PF0043920=Bromodomain=PD(44.9=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]