BtaINT0026730 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010582 | BRD3
Description
Bos taurus bromodomain containing 3 (BRD3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076873]
Coordinates
chr11:104872731-104875456:-
Coord C1 exon
chr11:104875085-104875456
Coord A exon
chr11:104872860-104875084
Coord C2 exon
chr11:104872731-104872859
Length
2225 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CCGTGGCGTCTGTCTTACAGAAG
3' ss Score
8.35
Exon sequences
Seq C1 exon
AAGAAGGGCGTGAAGCGGAAAGCAGATACCACCACGCCCACGACGTCCGCCATCACGGCCAGCCGCAGCGAGTCGCCCCCGCCGCTCTCGGACCCCAAGCAGGCCAAGGTGGTGGCGCGGCGGGAGAGCGGGGGCCGCCCCATCAAGCCGCCCAAGAAGGACCTGGAGGACGGTGAGGTGCCGCAGCACGCGGGCAAGAAGGGCCGGCTCTCTGAGCACCTGCGCCACTGCGACAGCATCCTCAAGGAAATGCTCTCCAAGAAGCACGCGGCCTACGCCTGGCCCTTCTACAAGCCGGTGGACGCCGAGGCCCTGGAGCTGCACGACTACCACGACATCATCAAGCACCCGATGGACCTGAGCACTGTCAAG
Seq A exon
GTATGGCATGGACAGAGGGCCCGTCCCGCAGGCCCAGGGCGTGGCCCGGCTCCCTCCGCCTGCCCGCAGCAGCAAGCAGGGCCTTGGGGCTGGCCCGGGGCGCGGCAGGGACTGGCAGCAAGCTGTGCTCTGCCTCGTCCCCTCTGAACCTGTGGCTTCCGGTCACCTCTTTCTGTGGAACCGCTTTGGTTCCTCTGTTTCTTCCTGTCCTGGTGCGTTTGCGGGTCTCTGTAACGCTAGGCGAGGAGGCCCTTCACAGTCCAGCCCCTCCCAGGATAGACGCGGGTTTTGGAGGAGGCCGTGAAGGAGCTGGCCCCAGGATCCCCGCTCTCTCAGGCCCTGCACCAGGGTCTTCCTGCCCCGAGGGCTTCTCCCTTGGTTTTTTGTGGGCATTGCAGTGGGTCAGGCCAGGTGTGGACAAGCAGAGAAGAGCAGGCTTGGGCCAGGCAGGGATGGAGGGGGCTTCTTGGCTGGTGGCAGCCCAAGGGCAGGAGATCGGGGCTGTGAGCTCCTGAGGGGTCTTCCCCGCGTGGATGAGGGGGCTCAGGCCGAACACAGCTCTGCTTCCTCAGCCCGTTTCAGTCTCTCGTGGTCTGAGGGGTGTCCCCGGCACATTGGCGTGTGTGGCCTGCAAAGCTGCCCCCACAGAGGGGAGAGGGGGTTCTTTGCACCTGTGGGGTCGGGGCCCTGAGCTGCCGGTCTCAGTCATTCTGCCCCCACTCCGCGAACGCTGCCCTGGGACAGACTCTCCTTCTGGAAGTTTTGCTCCCCACTAGGGGCAGGACAGGCCCGGCCGTCCAGGGCAGTGAGTGGTTCCTGGGGAGCCTGCTGGGCTGGGTGACCGAGCGGCCTCCTCACCTTCTCTGACCTTCTCCCTGGTTGCAAGGGCAGGCGCCGGCTTCCTTAGACACATGCGGTGCTCTGGGGGCCCTGCCTCTTTTGGGAGCCCCGCGGCACCAGCTGCTTTTCCTGGGCCGATGTTTCGTCTGTATGGTGTGAACAGAGGGTCAGGATGCAAGCCAAGCAGCAGAGGGAAACCCCGCCTCTGGTTCCACTGTCCCCCTTCCCCAGGGGTGATTGTTGCTGCTGGTTCGGTTACATCTTTTCTGACCAGCTCCTGGCTCAGGCTAGCTCTTTCCCAGCAGGTTTTGTCAGTGGGGCAGTGGTTCCCAGGCTCTGAGGTGCACCAGGACAGTGGCCAGCAGTCAAATTAGGGCCGAAGTCCGAGACTGCCACAGGTGTTGAGAGAGTCTTGGGTGCCCATTTGCTGAGCTGCTCCAGAGTGGGGAGGTTGTGCAGAGGGCTGGAGCCCAGCAGCCCCAGTGTTGCTGGAAGCTCCCAAGAGGGCAGAGGAGGGTGGTGTGTGCTAGGCTGGAGGGGCTGCAGGTCCTAGAGTCTGACCACCAGCTGCCCCTCCTCCAAGGCCAGGACTTTGTTGCTCTGGGCACCGGCGGGGTGGGTGGCTGGGCTCCGGGCCAGTGTCCCGCGGCAGTAGGGCACAGCCCCCAGGATAAATGGGCACCTCAGACCCCCGACACGAGGTCCCTGACACATGAGCTCCATGTGAACCCAGCCAGGCCCAGGCAGCTCACGCCTCGAGAGCCACTGCCCGGTGTGCCCTGACCTTGCTGCTTCCGTGTGGCGCCCCCGTCTGGGCGCACCCCGTCCCCCGTCGTGGTGCCCATCGTCCGTATCCCAGCGGCGGCGGGACAGTTGGGTGCCACCGGAGGCAGGCTGGCCAACAGCACCTGGATTCTCCAGGGAGAAAATTAAAAGTCTCATTGCGAGAGCTGAGTCACCCCCTAAACGAGCGGAGGGTGACTTCCTGCCAGAAGTTGCTCGTTCCCTACCAGAGCCCCTGCCAGCGGGGACACGGATGTGTGAAAAATCATTCAGGATGTAGACCTGGGATTTGGGGTGAGGATGGGGTGGGTGGTGGCTACAGGAGCTGACTCCTGTGAGCGCCTTTTTCTTTCTCCCCGGGGATCTGCCTCTCTCCCAGGCTCCCGGGCCCTCCCCTCCAAGCCCCCCTTCCCCGCTCTCCCGGGCTCCCGGACCCTCCCCTCCAAGCCCCCCTTCCCCGCTCTCCCGGGCTCCCGGACCCTCCCCTCCAAGCCCCCCTTCCCCTCTCTCCCGGGCTCCCGGACATGGCCTCAGGCTGGTGCTGGACCTGTGGCGGCCCCGAGGCCCGGCAGTGCCTCACGCCCGTGGCGTCTGTCTTACAG
Seq C2 exon
AAGAAGATGGACAGCCGCGAGTACCCGGACGCGCAGGGCTTCGCAGCCGACATCCGGTTGATGTTCTCCAACTGTTATAAATACAATCCCCCGGACCACGAGGTGGTAGCCATGGCCAGGAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010582:ENSBTAT00000013992:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.758 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(52.8=37.9)
A:
NA
C2:
PF0043920=Bromodomain=PD(44.9=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development