GgaINT0123972 @ galGal3
Intron Retention
Gene
ENSGALG00000002682 | BRD3
Description
NA
Coordinates
chr17:7847474-7851399:-
Coord C1 exon
chr17:7851028-7851399
Coord A exon
chr17:7847603-7851027
Coord C2 exon
chr17:7847474-7847602
Length
3425 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGT
5' ss Score
7.99
3' ss Seq
TTTGGCTTGTTTGCTTGCAGAAA
3' ss Score
9.57
Exon sequences
Seq C1 exon
AAAAAGGGAGTGAAGCGGAAAGCAGACACGACCACCCCCACCACCTCCGTGATAACTGCCAGCCGGAGCGAGTCCCCCACGCCCCTCTCAGACCCCAAACAGGCCAAAATCATCGCTCGGCGTGAGAGCGGCGGCCGGCCCATCAAACCACCAAAGAAAGACCTTGAGGACGGAGAGGTCCCCCAGCATGCAGGGAAGAAGGGCAAACTGTCTGAGCACCTCAAGTACTGTGACAGCATTCTCAAGGAGATGCTTTCGAAGAAGCATGCAGCCTATGCATGGCCCTTTTACAAGCCCGTTGATGCAGAGGCCTTGGAATTACATGACTATCATGATATTATCAAACACCCCATGGATCTCAGTACTGTTAAA
Seq A exon
GTACGTCTACACTTACCACCTCTTTTGCAGGATATCTCAGCCCTCTGGTTGCAGAGGACTGACTCCTTCTGGTGGGGGGAGGGAAGGGACAAGGGTGGAAAACCAAAACCTTTTGGATATCATCTGTATATTTTTGTTTTGTTTCCTTACCCTCTCCTTTTTTCTTCCCCGTAACCTGGGATGTCTTTTCTGCCCTACGAAGCAGACTGTATGATGGCATCCTCTCCTCTTTGTGAATAGTCCAGCTGTTTAAACTCGTGTCATTGGGATTATGTTGCACTCAGAAGAAGAGGTGCTGTATTTCATAGGATTCAATTGATAGTATCCCATTTCCAGAAGCTGCTGCCTGGCTACTTGTTGGCATGATGTGTGGTCTAGATAGGCTTACACTGAGCAAATCCAGCTGGAGCGTGAAGATCAACTGGTGCTTAGGTGAGGGGAGGAAATAATGTGATGCTATGTGGTTCAAGCTTTGCTCTTCAGGACCTTAGCTTAGTGTGGTCCAGTATTCAATATGTTTTTCCCAGAAGACTGGGAAGTTTCTCTGAGTCCCTTCTAAATATGTGTTATTCTAGTTCCCATCTTATGCTTGTCCATTGGAATCAGTGTTGGTGGAGATGAGACTTTCTTCTGTGTGCAGAAAGTTAAGGTGTGTGTGCTGGCTTTCAGGAGCATGCCAGGGCTGCTGTGCACCCAGCTTGGCCACTGTGTGGGATTGTCTCAAAGGCCGAGCTGACTAAAGGGCAGCTGCATTCCTGGTTCCTTATATGTTCCTTGGCAAGCAGTGTGCAGTGCTCTGGTGTGCCATGCCATTTGGCTGTGGTGCTGCAGTGGTTCTTACTACAGCTACTCTGTTTTAACAAGCTTTTAGTTATATTGGTGGTGAGAGAGTAGTCAACGCAGTCTGTGCTGAGGACTAGATAAAGAGTTAGTGGTGTCTGAGTTATTAACTGTCCTGATGCCATGGTCTTTGGCAAGTTTCCCCATGGCTATGTGCCTTTGTTTTTCCAACCATAAAATGGAGAGAATAATGCTTAACCTACCTCACAGTGCTGTTGTGAGGGCAGATGTCTGGAAGCTGTTATCTAAGTCCTAATTATTATTGATTGGGTTTTACCCAAGCTTTGCTAAAGGCTTGCAGCAATTTCCTCAGAGGAGATGAGAGTAAGAAGGGTGAGTTGAGCTGCAGGCAAGAAGTGGGAGCTGGAACAAGTGGTAAAAGGTGGGATAAGGGCTGAGTTGAACATAGTAGTCTGGGAGTCTGGTGCACCTGTGCCTCATTCTGATATTCTGCTGAGAGAGGAAGATCCCAGGTTTCCATTTTGTTGTGCTCTGAGGTCCTCGGAAAGACAAAAAGGGAAAGACAAAAAACTTGTAAAAGATTGATGCAGAAAGGGAGGGAACAATGTTTTCTCTTCATCCTTTGTGGGCAGGACGAGGCTTATTTTAAAGCAGCAGAGGCTAGACATTAGGAAACATTTCTGAACATTAAAGGATCCTGAACAATACAATTGATTGCTAAGAGAAATAAGATTTTTTTCTAGCTGCCTTCCCAGCCTTCCAGTCCTGCTGTCTGTGACTTCTGATTTGCCATTGTAAATGTAAAAAAAACAAAACAAAACAAAAAACCCCCAAACTGTTAAACAGCTGAATATCTCAAAATGAGTTTATAACCCAAATATATTCTGCTGCATGATTTTAAAATCCGTTTTCTTTTGTCAAGTTAATTTTTCTTTACAAGGAAGCAAAAAATAAAAATAAAAAATCCACAGATTAAAATGTAGTTGGGCCATGAAACTGTTGGTTTTGGATGAAAGCAAAGCCTTAGATGCTGAAATGTATTTCACAGGCTGTAATCAGCCGTTGAGTGTGCCAAACAAATACAGCGTATCAAAAAGGCCTTTCATGAAGTAAGATGTATTTTAGAATAAGCGGCCCCTTTCGTTTGAACATACTGTTTTGCTTTGGAATTGGCCTGAGACACTTTTTGAACACGGCCAGCTCTCCTTCAGACAGGAGAGGCACAAACGTAATTCCCTTTCCATCTCTGTGCTGCAGTTTGGAGGATTCTCCTCTTCAAGAAAATGAGCTCTCGTGACACAAGTTTGACAGGCATCTAGCTGTGGTACAGCAGGGTGAGATGCTGCAGGAGTGTCATTGCCCTGCGTGCAAACCCCTCCAAAGCTGCATCCATGGAGGTGAAATTCTGCAGCTTTAGCACTCGTTGCGATGATTCAAGGTGTTTCCAGTATCTACCGTGGAGCTGTGAAATGTCTGTAGCTTCCATTGAGCAAATGGGACTTCTGCTTGGGTTGAGACTTAGGTGTGAGCTGCAGACTCTGAGCCTTCTGCTCTGACGGAGGATGAATCTGCCCATCCCATCCGCAGTGTGTCTGTCAGGCAGCCCGTTCCTGTCACTGGGGGATGCAGGTGCATGAGGCATACAAAAGGGAGGCCTGCAAGCACTTGGCAAGCAGTGAGTTTCTTTAAACTCTTTAAAATGCAAATGAAATCTAGCGTTAACCTTTTTAAAATTTCCTTTTGGAAGGAGTAATTGGAGCAAGATTTTACATGTGGTAGTAATACATGCATAAAATCAATTAAGTACTGGGAATGCTGTGAATTGTTTTTTAAACCAAGTTATTCAGTCCCAAACAGCAAGAGAAGTGGATGAAGGTGAGAGCTGAAAAACGAGAGAGAGGATCAAGGTGCAAATATTTAGCCCCTGATACTTATCCTCACTACAGTGGGAAAATAACATTAGGCACAGATTGATAAAGGGCAAATTCTGTATCCATTCTGTATTTCTCAGCTGGACTTCTTTAAATCAAGAGTTGGTTTTGTAGCTTAACTCTAAGTGCCTGTCTGGCTGTAGACATCACCAAGAGAAATGATGCTTTGTGTTAGTCAGACTAGGTGCTAGCCATCTTTTCTGCCTTTTCAGATTTATGCTGTAAACATCCCCAAGCAGCATGTAGGAATTCATGCTGAGGGAACTCCTTTAGTTGTAACTCTGACTTCTTTCCCTTTGTCCTTACATTAGTTTCTGATCCAGCAAACATTTTCTAAATGGCTCTCTACTTTTTAACAAGCTGTGGGCACTGACAAACTTGCATAGTATTGTTTAAAAACAAAGAAAATAACCCAAATTTAGAATTATGAGAGTTTAAACTATTGTGGAACTATATTAGCTTTAGTTGTCTGGTTTTTGTTTACTTGTTTTAAAAAGCAGCAACTCTAAATGTTATTTGGAAACTAATAAGCCTGATCAAACTACTGTTCTCTTAGACAAGTGTGATTTTTTTTTTTTTTTTTGAAGCTGTTCTGAGCTCTCTCTATGATGCACGTGTCCTCCATGCAATTGTTACAAATGCCTTTTGTTTATGACTTTATCTCCTCTTTTCCTTTGGCTTGTTTGCTTGCAG
Seq C2 exon
AAAAAGATGGACAGTCGGGAATACCAGGACGCACAAGGTTTTGCAGCAGATATTCGGTTAATGTTCTCTAATTGTTACAAGTACAATCCTCCAGACCACGAAGTGGTAGCCATGGCCAGGAAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682:ENSGALT00000004226:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=NA C2=0.279
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(52.8=37.9)
A:
NA
C2:
PF0043920=Bromodomain=PD(44.9=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]