MmuINT0025669 @ mm10
Intron Retention
Gene
ENSMUSG00000026918 | Brd3
Description
bromodomain containing 3 [Source:MGI Symbol;Acc:MGI:1914632]
Coordinates
chr2:27456909-27459828:-
Coord C1 exon
chr2:27459457-27459828
Coord A exon
chr2:27457038-27459456
Coord C2 exon
chr2:27456909-27457037
Length
2419 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CACCTTGTTGCTTGTTACAGAGG
3' ss Score
6.79
Exon sequences
Seq C1 exon
AAAAAGGGCGTGAAGCGGAAAGCAGACACAACCACACCCACAACATCTGCCATCACTGCCAGCCGGAGTGAGTCTCCCCCACCACTTTCAGAGCCCAAGCAAGCCAAGGTAGTGGCCCGAAGGGAGAGCGGGGGCCGCCCCATCAAACCTCCCAAGAAGGACCTGGAAGATGGTGAGGTCCCACAGCACGCGGGTAAAAAGGGAAAACTGTCCGAGCACCTGCGGCACTGTGACAGCATCCTCCGGGAGATGCTGTCCAAGAAGCATGCTGCCTATGCGTGGCCCTTTTACAAGCCAGTGGACGCGGAGGCGCTGGAGCTGCATGACTACCATGACATCATCAAGCACCCCATGGACCTCAGCACGGTCAAA
Seq A exon
GTAAGTGGGCTGTGCCCATGTCAGAGTCAGTCGGCTCCTTATGGCCCTGGTAGCCCTGCTTGGCTGAGCTGCACTCTGTGACCTCCTGCTGGTCCTCTTCTGTTGGTGCCTCTTGTCCCTGAGAGCTGGGCCTGCCCACACTGGACCTCGGGGACCAGGACCTGTTAGTTTCTGAGTCTGCACCCTCCATTGTCACTTATCCTGGTGGAACATAGAGCCGTAGTTTAGTTCTTTCTGTCCCCCAGTTCTGTATCACCAGAAGGGGGCTCTTAATGGTGTCTGCTTCAGAGACTAATGCAGAGGCAGGTAGATCTCTATAAGTTTGAGACTTACAGCCTGGTGTGCAAAACAAGTTCCAGGACATTCAGGGCTACATAGAGAGGCCCTGTCTCGAACCCCTGATGTGTAGGTACATCACAGCAGAGATGGGGAGTCTGGTGGCCAGCAGAGTGGCCATCTTTGATCTTGGCCTTTACGTAGATAGGGAAGTATATATAGAGAAATGGACAAAGAACAGAGGCCACAAGCTCAGCTGTGCTATCCCCACACCGGCGTTTCCTAGAGTCTGTGTCTTGTTCTGGTTTTTGTGGTGTCCAGCCAGGTCACGGCTTGGCGGGTGTAAAGGTGGGCTTGAGTTTGTGAGAAGACCCTGGGAGATGATAATGCAGTTGAGCTTGGCTCTTCCTAAAGGAATCTCTGCTGACTCCCAGGTAGTTGCTTATTTCATCCAGGCGTCCTTTCAAAGGCAGTGGCTTCAGCTGAAGAATCATGGTGCCTGAAGCAGAATCTCCCAGTTGAAGCCTTTTGTCCTAGATAGTAGTGAGTATGGGGACAGGTAGACCTAGCCACCTAAAAAGTGTTTATACCTGTGTTCGTTTGAGTAAAAAGTGAAGAAAGCAGCTGGGCCTGTCCAGCAGGGCTGGAGTGAGGAAAAGAGCCCTGGGAAGGAACCACGTTGTCCCAGAGCTGCTGGTGGCCTTGGTTTACTCTGCCTGGCCACTGCTGTGCAGTTGCGTGGAGTTCCAGTTGCAGCTGGAACTTTGGGGGCTCCAGTGTTTTGGCTGTACTGGGACAGAATAATTCCGTTTGGTCGCTCTCTCATCTGTCCAAGATGAGGCACCTTTGGGAGTTCAGTTGACTGGGAAGTCGCCATCTGCTTTGTTCAGGCCTGACAGAGAGGCTGTGTGCTTACACAGGTGACGCTTGCATGGCTGAGCCCGACTGACACAGTCTGTGCGAAGACTTTAGCAGAAGAGCCCGAGACTAAAGACTGAAAGACTAATAAAGGCTATACAGTAAAGGGGGAAGTACTGACTAGGCTATGGATGTCATTTCTGTTTTAGGTCTGTGTACGAGTGTTGGCCTGCATGTGTGTATGTGCACCATGTGCATGTCTGCTACCCACTGAGGTGTTGGATACCCGGCAGCTGGAGTTATAGATAGTGGCCGCGTGGGTGATGGGAACTGAACCCAGCTCTTTTGCAAGAGTAACAGTTGCCCTTAAACACTTTACCATCTTTCCAGCACCCAGTACAGTATAGCTTTTAATGATAAAGCTTAAGGGGGGATTGTCCCGGCATGTATCATGCTAGTTCCAGGAGTTGTCCAGGTCCATATCACACCAGTTCCAGGAGGCATTTCTCCAAGCAGCCATCTGCTGAGACATGAGTGTCTTTGGGCACAAGGGCCAGGCCTGTTACTGAGATCCCTCCACTGTGTAGGAACACATATCCAGTCAGGGGTTGGGATGGATACTTAGCTCCCCACACAAGACAGGAACCCTATACCCTTATAAGCAGCTTTTGCCAGCCCAGTCCCCACCGGTCTGCCCTGCCCAGCTTTGTGTGCCTGTGTGACCTTGCCCAACCTGCAGCTGCTGGGACTGCTTGGGCTAGACTTCAGTGGAGTTTGAGGGGCTTTGCTCCAGGGTGGTCCCCGTGATTGTCAGCATTGGCTTCACAGACCTGTACTGCCCTGCCCTCCACCCCTGCACAAGGTCAGAGCTGCCTCTGGGCCCAAAACATAAGCAGCAGGTTGGTAAGAGCGCCTGGATTCCTCCCAGGAAAAGCTGTCTTCTGTGAGCTGAATGGACTTCCCAAGATTGGGATTGAAATTCCCCTAAAGCTCCCCGCACCAGAACCTTCTGCGACACGCGCCATGCCATGTGGAACTGAAAACTAAATGAGGGTGGGGTTGGTGTGAACCTTTCTCCCAATTGTTCTTCCATTCAGTGGCTCTGTCCTTAAAGCCAGATGCTTCTTGTTGGATTTCTTACTCCTTCCCCGAGGGCTCCCGCCTCTGACAACCCTAAGCTAATTGCCAGATGCCTGACTGGCAGTTGGCTTGGTTGCAATGGGATGTTCTGAGGATCTAAGTCTATCCCTTGCATGGTCTGCTCACACCTTGTTGCTTGTTACAG
Seq C2 exon
AGGAAGATGGATAGCCGAGAGTACCCAGATGCACAGGGCTTTGCTGCTGATATCCGGTTAATGTTCTCGAATTGTTATAAGTACAACCCTCCAGACCACGAAGTGGTGGCCATGGCCAGGAAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026918:ENSMUST00000028282:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.661 A=NA C2=0.246
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(52.8=37.9)
A:
NA
C2:
PF0043920=Bromodomain=PD(44.9=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types