HsaINT0018591 @ hg38
Intron Retention
Gene
ENSG00000137948 | BRDT
Description
bromodomain testis associated [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr1:91977043-91978296:+
Coord C1 exon
chr1:91977043-91977393
Coord A exon
chr1:91977394-91978167
Coord C2 exon
chr1:91978168-91978296
Length
774 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GTAGTTTTTCTTTAATTTAGGAG
3' ss Score
6.93
Exon sequences
Seq C1 exon
GTTACAAAAGGTGTGAAGAGGAAAGCAGATACAACAACTCCTGCAACTTCAGCAGTTAAAGCAAGTAGTGAATTTTCTCCAACATTCACAGAAAAATCAGTGGCACTGCCACCTATAAAAGAAAATATGCCAAAGAATGTTTTGCCAGATTCTCAGCAACAATATAATGTTGTGAAGACTGTTAAAGTAACTGAACAATTAAGGCACTGTAGTGAGATTCTTAAAGAAATGCTTGCAAAGAAACATTTTTCATATGCATGGCCCTTTTATAATCCTGTTGACGTTAATGCTTTGGGACTCCATAACTACTATGACGTTGTCAAAAATCCGATGGATCTTGGAACTATTAAG
Seq A exon
GTAAATGTTGCCTTAAAAGGAAGAACTTCTTTTTCTTGATTATAAAAGTAATTCATCATTGCAAAGAAATCTTAAAATCTAGAAAAAGATGAAGGAAATTAAGATCATCCAAGTCACACTATCTGGAGTGAGTCTCTGGAAAATTTTAAAATATATCTTTTTGTTTTCTTCCACTTGAACATGTCCATGGTTCTAGGCCGGGCACAGTGGCTCATGCCTGTAATCTTAGCACTTTGGGAGGCCAAGGCGGGCGGATCACTTGAGGCCAGGAGTTTGAGACCAGCCTGGCCATGGCGAAACTTCGTCTCTACTAAAAAAAAAAAAAAAAAGCTGGGAATGGTGGTGCATGCCTATCGTTCCAGCTACTCCAGAGGCTGAGTCACGAGAATCACTTGAACCTGGGAGGAGGAGAGGTTGCAGTGAGCGGAGATCATCCACTGCACTCCAGGCTGGGTGACAGAGGGAAACTCTGTCTCAAAAAAAAAGATTATATGAAAACACTCTGCTTCTCTGCTTTTGTGATTTTGTTCCAGTTCTCTTTACATGGAATGTCCTCCTTCCTCATCTCTACTTGTCAAAATTCACTGGATTTTTTTTCAAAGTCTAAAAAATATGAAACAAATGTAGCAAAATTTTAACATTTGTCAAATCTGGATGGTGGACAACTGTTTTCTGTATATTTGAATTATTTTGTAATATGAACATTTAATGTACGTGGTCAAATAATTATTGAATTGAACTATTTGTGAATCCTGTAGTTTTTCTTTAATTTAG
Seq C2 exon
GAGAAAATGGATAACCAAGAATATAAGGATGCATACAAATTTGCGGCAGATGTTAGATTAATGTTCATGAATTGCTACAAGTACAATCCTCCAGATCACGAAGTTGTGACAATGGCAAGAATGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137948:ENST00000362005:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(52.8=40.2)
A:
NA
C2:
PF0043920=Bromodomain=PD(44.9=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACTTCAGCAGTTAAAGCA
R:
TGCCGCAAATTTGTATGCATCC
Band lengths:
358-1132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development