MmuINT1005574 @ mm10
Intron Retention
Gene
ENSMUSG00000029279 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr5:107350076-107356880:+
Coord C1 exon
chr5:107350076-107350426
Coord A exon
chr5:107350427-107356751
Coord C2 exon
chr5:107356752-107356880
Length
6325 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CTAATTTTTCCTTAACTCAGGGG
3' ss Score
5.82
Exon sequences
Seq C1 exon
ATTACAAAGGGTGTGAAGAGGCGAGCAGACACAACAACTCCTACCACTTCCATAGCTAAAGCAAGTAGCGAATCTCCTCCGACACTTAGAGAAACAAAGCCAGTGAACATGCCAGTAAAAGAAAATACAGTAAAGAACGTTTTGCCAGACTCTCAGCAACAACACAAAGTTTTAAAAACAGTCAAAGTAACGGAGCAATTAAAGCACTGCAGCGAGATTCTTAAAGAAATGCTTGCCAAGAAACATTTGCCGTATGCATGGCCCTTCTATAATCCTGTGGATGCTGATGCTTTGGGACTCCACAACTACTATGACGTTGTCAAAAATCCCATGGATCTCGGAACGATCAAG
Seq A exon
GTAAATACTGCCTGAGTGGGAAGAGCTTTCTTTTCTTGTCTTGATTGTAAAAGTATTTCATCATTGCAAAGAAATTGATCTAATGTCCAGGAAATTGTGAAGAAAATTACATCACCAGAATACTAACACCTGAAGAGGACCGTTGGGACGTTTTAAATACATCTTGTTGTTTTTCCTGTAACATATCCATCTTACAGGCTAGTGGAGATTGAACCAGGGTCCTCAGTCTTACACAGCATCTCCTCGGCCCTGGCTCTCTTAAAGCACAGTTTTGTTTCATTATTTTTATCAATATAGTAAAGTTTGTTAACATGCTACTAAACTTTGTGTTTGCCCTCATTTCTTTTATTCTGCTGTCTCCCTCTAAGCTTATTCTGTTAGTTAAAATTCAAAAGCAGTGGTCATTTTTATGGATTTATAGATAGTAAACTCAGTTTATATATAGAAGTATCTTAAATGATTCTTAAAGTGAATATAGGATTCAAAAAAACAGTCATTTTCTGTCAACACTTGGATGACGTTCCAGCCTCTATTTGCTGTCAAGCAACTTGTCATTCCTTTGTACCATAATTTGTCTTCCTCTCTCTAGCTCAGTATTTGATTTATATCCATCTTGTACTGGAAGTTAACCCTTTCAGTCTGAGGATCTATGTCCTAAGTTTTTAATTGTTATATCTTAAATAGTACTGTTTTATTTCTTGATACATGCAAACTCAGACCCAAAGGTTAAAGAGTAGTATCAGGCCAGGCAGTGATGGTGCCTTCAATCCCAACACGTGGAAGGCAGAGGCAGGCAGGTCTCTTGAATTTGCAGCCAGCCTGGTCTACAGAGCGACTTCCAGGATAGCCAGGACTACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGACTATGATCTGAAATAGCCATATGTTAAGAGGTAAATAAGAGTCTGTAGTTACTGTATATATATTTCAAGAAGAGAAAGTAACTTGTGGAATAGCCATGAGGTAAAGAAAACAATTCAGAACAGTATCTTAGTATTTAGAACCTAGGAAGGATGTGAGGGAAACCCAGAGGAAGGTAAGATGGGAAGGAGGTCACGTCTGAATAAAGCTGCTGCAGAGAAGCATGAGCGTCTCAGCCTTAACTGAGGATTTGTGGTGTTTTGTCTGGGAGCTGGGTACACACCAGTTACAAAGCTGTTAGATGGTTCCTGAAACAGGAAGATGTCGACTATAATTCAGCTCTGAAATCATTCTTAATTGCCATTGATGTAGCTGGTAGAAATTACATTCTTGAGACAGATTGATGCCTCAGTGCTTAAAAGCATGGCCTGCTCTTACAGGGGACCTGGGTTCAGTTCCCAGCATCCACACAGTGGCTTACAGCTGTCTTTCCTGGAAAGTTTCAAAAGACCCATCCCCTTGTCTGGCCTCTTTGGATACAGGCATAGGCATGCACGTGGTACACCAACATACATGCAAGGAAGATCTCTCTAAGATAGATAGATAGATAGATAGATAGATAGATATACATATAGATATAGATACAGATATAGATATATCAAAAGAAAAGAAAACTAACCAGTCATGGTAGTGCACCTTCAGTTGTAGCACTCAGGAGGCAAACACAGGGTGTATCTCTGAGTTCAAGGCCATCCTGGTCTACACAGTAAATTCCATAGAAGTCCTGTTTCAAATAAAAACAAAACAAAATGATGGCTCCATCCTGCATCATCTTAGTTTTGCATTTCTGCCCCAGCCTGGCGCATGATCCCCTGGCTCATGATCCATGGCTGGTGAATGCTGGGGTCACTGGTGGATGCTGGCTGGGATCACTGACCTTGCATTTGTTTAAAGTGAGCCTCCTGTAATTCACCTGCTGTTGGTCTGTGGATTGTAACTCACACCCCTGTTACCCTTATGCTTTTAAAATCTTTTCATTACTTTCTTACTGTAGAATTTCCATGTCAAGACAGTCTGAAAACACTTTCCTGTCTATTTTTCCCACAGTGCCTCCTTCAATCTCTTTACGTGTAAATGCTCATTGATTTCTTTTGTAAGTGTAAAATTTGATAAATATAGAACAATGTTTGATATTTGTTTTAAAAAGATATACATAGTGATCTCCCTCCCTCCCTCCCTCCCCCTCCCTTCCCCCTCCCTCCCATTTACTTGCTTCTGGTTAGCACACAAAGAAGTGGGTTCCTGTGACTCTCTTTCCTTTCTTTCCCTTTGTTCATTTGTTGGTTGAGACCTTGTCTCACACAGCCCAGGCTGGCCTCACACTTCCTGTGTACCTGAGGATGCCCTTTACTCCTGATCTTCCTGCTTGCACCTCCCCAGAGCTAGGCTCACAGGCATGCACATCATGCTGGCCATGATGTTTCCATACATATACATCACTACACTTTGTTCTTGTCTGCCACCCCCATGACTCCTGCTGCTTGGCTCACCCCCTTTATATCCCCATAAATAGGGCCCTCTTTCCTTTCGCAACATATGTTCTATTGCCTTCTGTTGTTCCCTTTCTGCATCCTCTCTTTACTGCTCTTTCTACTTTCATACTGTACATATATCTTTACATATATGTACATACTGCATATGTATATACATATATGTGCAAAAATTTAAATCTAGATTCCACATATAAGAGAAAACATATTTGTCTTTTCAAGTCTGTCTTATTTCAGTTCTCTGTTTCCTTCCTCTTCAGAGCTGAATAAAATTCCCTGTGTGTGCACCACATTTTCATTAGTCATCTGCTGATGAGCCTCTCGGCTGTTTTACATCATGTCTGTCATGCACAGAAATAGCAGTGATCATGAACGTGCAGGTGTCTTTGCTATGCTGATTGAGAGCCCTTTGTGGACTTACATGCTGGACCATGTGTGGCAGTTCTCTTTTGCATCTTTTTTAAAAAATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCTCCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTAAACTCAGGACTTTCAGAAGAGCAGTTGGTGCTCTTAACCACTGAGCCATCTCATCAGTCCCTCTCTTTTGCATCTTTAAAGGACACTCCATACTGATTTCCAGAGAGCCTATACAGATTTGCATTCTGACCAGCAATGTGTAAGAGTATCTTTCCTGTGTCTTCCCCAGTATGTGCTGTTTTCCCCCCTCTTGATATTAGCCACTCTGACTGCAGTAAAATAGAAAATCAATGTCGTTTTTATTTTTACTTCCTAAGATAGATAAGGATATTGAACACTTTTAACTATCTATTGGCTGTTTGTTTTTCTTCCTTTAAGAACTGCCTATTAAATTCACTAGTGTCTCTATTTTAAATGATGGGTTTTGTTTTGTATGTGTATACATATGTGGCAAGACTATATAGTTTCTAGCACTAATCCTCTTCTTGTTGTCTAGTGTACGGTTGGCCAAGACTTTTCCTCCATTCCATAGGCTATCTCTTTATTCTGCTGATGGTTTCTTTTTGCTACATAGAGCTTTTTAATACTACACAATACAACTTATCAATTCTTGTTTTTCATTTACTGAGCTGTTGGAATACTTTTATCAGAATGCTTTGTATGGTTGTTTTGAAGTGGGATTTCACACACACACACACACACACACACACACACACACACACACACAGGATTTCCTTCTGCATTACCGATGTGCTAGAAAAGCAGCTGCTTTCTTATGCTGCTTCTGTGTACCGCTGCTTTGCTTGCAGGTGTTTGTCAGCCTTGAAGGTTTTCTAATGGAGTCTTCAGGGTTTTCTAAGTACAGAGTCATGTAATCTACAAGCAGGGAAACCTGACCCTCCCTTCCCTGTGCCTGCCGTCTTTCTTATTTCTCCCTGTGTTCTTACAGCTGTAGCTAGATTGACTAGGAGTGAAGAGAATGGGTTCCCTGGTCTCATTCCTGATTTTAATGGAAATTAATTTGTTCCCCATGTCGCATAAAGCTGGTTGTAGATTTGTTGTATATGCATCTTAAGTCTCTTTATTCTTAGTTCAGAAATTTGCCAAGGACATTGGGCTCTTCTGTCTGACCTTTCTCCATCTCTTAAGATGATGGTATGGACTCATCCTCTTTGCTTTTCCTGGGTTGCTGGCCATCCTCTCCTGGTCTGTGGCCCACTTCTGTCCCTTGTTCCCCTGGTTTTAAATCTCCCGTAAGGTCACTGATCATTTTTACCAGTAAATGTTTGAAATCTTCATACGATGTTTTACTCCGTCCCCTGTCTTTGAATTCAGTGGCTAAGGAGCATTACACTCTTTTGTAAGTTTCCTTGCTTTCTCGTGGTTTTGGGAGAGTGTGGGTTTCTGTGTGTTGTGTTGTGTACATCTGTTTGTGTACATCTCTCCCGGTTTAATTTGTTTGTTTGTTTTCTTAGTGAATAGTTTGCTCTTTAGGGCTCAATTCCATTCACTGAACACCACTAAAACAGGAGAAAACAACTTTTAAACACGAGATATAGAAGTACAGTGAAAACTGGTTAAAGGTCACTAATATACCATTCATAGTCGGAAAACAAAAAATGGCAGAGTGCCAACGTTTAAAATGATGTTTAAATGTGAAACCAGCTAATGAATGAAGCTGTGGCAGGGAGTAGAGAAAGATGAAAAATAGAAGCATGGATAACAGAAGAGAAACAAGAAAGAAGAATTTTCTGAAGGAGAAAAATACATTAGTGGGAAAATAAAGATGGAAAATTACTCAATAACAAGAAAATGTAAAAAGTTATATAATGTGAGGAGATCAGAAAATGAGAACATCATTGGGATGTTTTTGTATAGAAATCAGTTGAGATCAGTCCTATTGGAAGCATAATAGGAAAACATCAAAAGGGAGACTAAGAGGAAACAAAAACAGATTATATGAAAATAAATTTTTAAAACGAAAACTTTTCTTAAGTATTGAAGAAATCATAGGCATAGAGGGGTGGTCAGCAGGTACACTTGCAGTCAGGCCTGACAACCTGAATTTGGCCTCTAGAACCCATGTTGGAGAAGGAGAGAGCTCACTTCTATGGCTGTCCTCTGATCTCCTTAAGAGATTCATTGCAGACACATACACATGCACAGGTCGGGGAGGGGCAGAGCAAGAAGACAAAGTTTTGACTTCTTTGAGGACTCTTCAAAATTGGAGAGGTAACACAGGTCAGCTGACTTGATGCTAGACTTGTGTCTCCTGCATCAGGGCTGTCTCCACTTTAACTTGGTCCTGCAGCTGTATATCAGGGGTCTGTGCTGCCAAGCTGAACACTGTAGCCTGTGGACTGAGCAGGTTCTCCTGCTCTCTGGAAGATCCCTAGTTTCTGCCCCCTGGGGCAGCTAATGTTCTGGCCAAAGAGTTTCTTCCATGTAGAATGGGAGAAGGCAAAGCAAGCACAGTGCTGAAATCTGCAAGTGCAGCCCTGCCTTCAGTTTCCAAGTCCACAAGCATTAGTCACTGCTGGGGGAGGGGATGCAGCTGCAGAGTTCTTGGGCCAGATGCATGAGCAGATGGGGGGGGGGGGGGACGTTCTACCCATTGAGCTCAGGCTTGTGGTGTTGGCTCCAGTTAGTAGGTGATGAGGTGTCTCCAGGCCCCTAGGCAAGACTCCTGTCACTTACACCTTTGGTTTGTCAGGATCTCACCCATCTGCTTCCTAGACTTATCCCTCACATTGGGTCTGTGACAGATCTAATTCAAGCTCAAATGGGACCTAGTCCACAGCCCTCTGAGCCAGATCTCTCTCCCTCTGCCAACCCCTCCTGTCTAAAAGGTCACTGTCTCAGTAAAAACCACAGCTGGATTTGAGGCTTGTGAGAACTGTGGGTTTGTCCTGTGGGTAGAACCACCTAGTATCTCTCTCACTGGGACTGCCTGGCTTGTCTTTTGGACGTAGCTTCTACTCCTTCTTCCTCAAGTAGGAAACCATACTGCTGGCCCTGTGTCTGGCTTCAGGCTCTTTTTACTGTTTCCCATCTTGTTGCCCCACCTGTTTCTCCATATTTCTAAGCTGCCCTATCAGGCCATTTATGAATTTTCAATATTCTTTCTCTGTTTGGAATGAAGTCTTTTTAAGAGATTTCCTATTCTCACAGCATGCACAGAGGCAAATGTCTAGGCCATCATCTTACCCAGACATTGAAATATTTTCTCTGTGTTATCTTCTCCATTTCCCAGTTCATCTAAATTGTTTCATGTGAATTGACTTCAGTTGTTTGTGAATCCTTCTAATTTTTCCTTAACTCAG
Seq C2 exon
GGGAAAATGGACAATCAAGAATATAAGGATGCATATGAATTTGCTGCAGATGTCAGACTGATGTTCATGAACTGTTACAAGTATAATCCTCCCGATCATGAAGTTGTGGCGATGGCTCGGACCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029279:ENSMUST00000031215:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(52.8=40.2)
A:
NA
C2:
PF0043920=Bromodomain=PD(44.9=93.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types