RnoINT0028976 @ rn6
Intron Retention
Gene
ENSRNOG00000026025 | Capn11
Description
calpain 11 [Source:RGD Symbol;Acc:1302946]
Coordinates
chr9:17734827-17737561:+
Coord C1 exon
chr9:17734827-17734896
Coord A exon
chr9:17734897-17737442
Coord C2 exon
chr9:17737443-17737561
Length
2546 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CCTACCTCCCTGCCTTTAAGGAG
3' ss Score
7.5
Exon sequences
Seq C1 exon
GATATCATACATAACCCCCAATTCATTACGAATGATTTCTCTCCCACGGACATCTGCCAAGGCATCCTGG
Seq A exon
GTAAGTAGGGGAAAGGGAGCTAGCCTCCATCTACGAGGAAAGTGGGAAGAAAGACTGGGGGCAACCGGATGGCTCTCTAACCTGGAAGAGTAGGACTCCGTTTCCCTCTTCCTCCCCTTCCAAGAGATGACAGTCAGCAGAAGTGCCACATGTGACCTCTGTCCCTCCTGCCATCTGGAGTGGAAGGAAGCTGAGGTAGTGAGGTTGATGTATGGATAAATCACCCAAGGCAGCAGTTAAGAGCTCTTTTTAAAAAAAAAAAAAAAGATGAAGACCAGAGTTCAGGTCCTAGCACCTAAGTAACAAGTCCGTTATCCACGTTATCCAAAACGCCTGAAGCTCTAGCTCCAAGGAATCCAGTGTCCCCCCCCCTCCCATACTGGCCTCCATGCACATAAAAATGTCACACACACACACACACACACACACACACACACACACACACACACACCTCTACAATGTTTTGTTAGGAGCCAGCCCTGAACGTGGCCCATACTCAGGATGCAAAGGATTATGGGGCTAGGGTGTAGCTCAGTGGGCAGAGTACTTGGCTAGCATGCAGGAAGTCCTGGGTTCCATCCTCGGCATTGTGGAAAACTGGGTATGGTGCTGTGTACCTGTAATCCCAAGAGCTAGATGAGGTCAGAGGATTACTCATGAATTCAAGGCCAGTTCGGTCTACACAGTGAGTTCCAGGCTAGCCAGGAGCCTGGGATGGGGGTGGGGGAAGAGGTGGGGAAATTTAAGGTCATCCTCAGGCTAAACAGTGAGTTTAAAGCTAGCCTGGGCTATAGGAGACCCTGACTTTTAAAAAAGGAAGAAGAAGAAGAAGAGTTGATCAGATCTTTTGAGGAGAAAGAAGTCAAAGGATTGTCTGACATAAGCACTAAAACTTTAGCACAGGTCCTCAAACAATGGGTCAGCAGAGCCTCCTGACATTGCTCTGGGGAGTGGGTTACCTTCTCCTTCCTGAGCTAATCTTGCCTCACAGTCTCCCTTCATCACCAGGGTAGACACCACAACCACTTTATTTTCTCTTTGTGGCAGGAAAAGGGGCAGAAATAAGTACAGCAAGAGACCAAGGAGCCCTAGAAACACAGTTGCCTCTGTGGCTCAGTGGGCCAGAGGGATGCTGGGTAAAGGAGGCCAAGAAATCAGTGACCCCCGAGTGCCCTTGTGTTGGTGATGACTGCAGTCTTTAATCTTGCCTCCTGCCTTCAGCCTCCCTCCAATACCCAGAGGTCTCTAGCCATCACAAACTTGTCAGGGCCCAAAAGCTTGGCCAGGCCCCAGAATTCACACCTCGTACCTGGCCTGTCATTGAGGACTGATCCCAGGAGACAGATAGCAGTAGATGTCTGATGTATGGCCCTGTGCTCCAGGACTGACTCGCAGTGGGATAGACACAGAACAGCATCTCTAGTACAATGTGGGTGATGGGGGAGGCATATTTCTTTTTTTACATTAAATTTTTTCTTTAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAGAATGCTGGTGCCCTCAGAGGCCAGAAGAGGGCATCCAGTCCCTTAGAGCTCGAATTACAGGTGTTTGTGAGGTATCTGACTTGGGTGCCTGGAGCTGAACTCTGGTCCTTATGATAGAGCAACAAGACCTCTCTACACCCCTCCCCCACCTTTTTTTCTTTTGGTTTTTTTTGAGACAGGGTTTCTCGGTAGCCCTGCTTTTCCTAGAACTCGATCTATAGTCCAAGTTGGCCTTGAACTAAAAAACCCACCTGCTTCTGCCTCCTGCATGCTGAGATTAAAGGCGTGCACCACTACTACCAGGCACGATTTTCCTTTTTAATTTTGTGTGTATGTGCATATGAATGCAGTGCCTGTGGAGACCAGAAGAGGGCGCTGTCTGTCAGATTGCCCTAGTCCTAGAGTTACCTGTGGTGGCAAATTACCTGCCATGGCTACTGGGAACTGAACTCCCAGTCCTGTAGGAGAGAAGGTGTACTCTTAATGGCTGAGCATCCCTCCAGCTCTTGAGTGGTTTGAGACAAGGTCTCACTCTGTAGAACAGGTTGGTGACACATGAACTTACAACCCTTTTAGCCTCCACCACCCAGACGCCAAGATTACACAAGTGTTTCAGGAGTCATCGTGGGCCTTTGGCTACTACTGCACCCTGTGCATAGAGTGGGAATTGGGGGGGGGGGCGCAGAGAAAAGTTAGTGGATACGTTCAACAGATAGAAGCCCGCCTTGAGAGCAAGCAGAATGCTATGCAGCCAAACCCAAATTCCCCCAAACCAAAGCATGTTAGCATGATCTGTGACTCCCTTGACTGAACAAGGATATGAGCTCATTGTCCCAGAGCCCAAGTTCCCTCAGTTTCCCCATTTGGCCCCTTTTCTAACACTTCTCAGTGAAAAGGTAGAAAGAGATCCTTGGGTCTGCCTCTCTGGTCGGGCATCTGGGGCCTCCACACATGTGAGCAACCCCTACCTCCCTGCCTTTAAG
Seq C2 exon
GAGACTGCTGGCTGCTGGCCGCCATTGGCTCCCTTACCACGAGCCCCAAACTGCTGTTCCGTGTGGTGCCTAGAAGTCAGAGCTTCAAGAAAAACTATGCTGGCATCTTCCATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026025:ENSRNOT00000065754:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.7=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]