RnoINT0031938 @ rn6
Intron Retention
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156758818-156760210:+
Coord C1 exon
chr4:156758818-156759138
Coord A exon
chr4:156759139-156759883
Coord C2 exon
chr4:156759884-156760210
Length
745 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TGCTTGTGTTCCCTCTGCAGATG
3' ss Score
12.3
Exon sequences
Seq C1 exon
ACGGAGCGGATCTGAGCCTGAGACTGGTGGATGGGGTGTCCAAATGTTCAGGAAGATTGGAAGTGAGATTCCAAGGAGAGTGGGGGACCGTGTGTGACGACAGCTGGGATCGCCGTGACGCTTCTGTGGTGTGTAAGCAACTGGGATGTCCAACTGCCATCACTGCCATTGGCCGAGTTAATGCCAGTGAGGGATCCGGACCAATTTGGCTTGACAGTATCTCCTGCGAGGGACATGAGCCGGCTCTTTGGGAGTGTAAGCACCAGGAATGGGGGAAGCATTACTGTAACCACAAAGAAGACGCTGGCGTGACATGTTCTG
Seq A exon
GTAAGTTAGAACAAAAGGCAGGTCAAAGAGGTATGGCTAGTGTGACTAGTGGAAACGATCCTCATCGTTGGGAGTTCCTTCACAGCTGGGGAGGGTCAGGCACACCCTTCATAGAAGGGTTACTTGGCTCCTTTGTCTGTATTATTAGTACTCTTTGGAATCACACCTTAAATTCTAAATCTATATGGAGCTCAGAGTTAATATTTAGGAATGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACATGTGTGTGCACATGAGTAATTAATATTTTCAGTCCTTAAGAACTATGTACCATTTCTATGTGGAATCCACAGTCAGCATTTGTTTATTAAGGCCTCGGTAAACAGATAAACCAAGATAGGCCTGTAGTCCAAGCCACTTAAGAGAGATTAGGGCAGAGGGTGGCAAACTCAAATACAACTTACTGAGCCCCATCTCAGTAATATTTAAAACCAAATCATAAAGAGGTATCAGGCATACAATCCTCTAGCTTATAAAGGGGACTAGGTTCAAGCCACAGTATTACCAAGAAACAAGCAAACAGCAGGCGCTGGGTAGATCACAGGTTCCGGTGTCTCGGCAGCGTCTGCAAAGGAAGGGAGTAGGAGGTCTTTTGGGAGCTACGCTGCCCAGGTTCCCTCTGCTTGTGTTCCCTCTGCAG
Seq C2 exon
ATGGAGCAGATCTGGAACTTCGACTCGTCGGTGGAGGCAGTCGCTGTGCTGGGATGGTGGAGGTGGAGATTCAGAAGCTGACTGGGAAGGTGTGCAGCCGAGGCTGGACACTGACAGATGCCGACGTGGTTTGCAGACAGCTTGGATGTGGCTCTGCACTTCAAACACAGTCTAAGATCTACTCTAAAACCAAAACTGAGGCAACAAATACGTGGCTCTTTCCTGGCTCTTGCAGTGGAAATGAAACTTCTCTTTGGCAATGTAAAAACTGGCAGTGGGGCGGCCTTTCCTGTGATCATTTCGAAGAAGCCCAAGTTACTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253:ENSRNOT00000068407:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.7)
A:
NA
C2:
PF0053013=SRCR=WD(100=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCCAAGGAGAGTGGGGG
R:
ACACCTTCCCAGTCAGCTTCT
Band lengths:
349-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]