RnoINT0031942 @ rn6
Intron Retention
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156765123-156765615:+
Coord C1 exon
chr4:156765123-156765218
Coord A exon
chr4:156765219-156765300
Coord C2 exon
chr4:156765301-156765615
Length
82 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
ATCTTCATTTCTCTTTCCAGCAA
3' ss Score
9.67
Exon sequences
Seq C1 exon
GAAACCAATCGCATACACTGTTGCCATGTAGTTCATCATCTTCGGTCCAAACAACAAGTTCTACCATTGCAAAGGACAGTGACGTTCCCTGCATAG
Seq A exon
GTGAGAATCTGTGATCAACCTGTAAAAATGACCTCAAACCTTCGAAAGTGCACTTTTTCTTTATCTTCATTTCTCTTTCCAG
Seq C2 exon
CAAGTGGTCAACTCCGCTTGGTAGGTGGAGGTGGTCGCTGCGCTGGGAGAGTAGAGGTCTACCATGAGGGCTCTTGGGGCACCATCTGTGATGACAGCTGGGATCTGACGGATGCCAATGTGGTGTGCAAGCAGCTGGACTGTGGCGTGGCTATTAATGCCACTGGTTCTGCCTACTTTGGGGAAGGGACAGGAGATATCTGGCTAGACGAAATTGACTGCAGTGGAAAAGAGTCTCATATCTGGCAGTGCCATTCACATGGCTGGGGACGCCATAACTGCAGGCACAAGGAAGATGCAGGTGTTGTCTGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253:ENSRNOT00000068407:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCATACACTGTTGCCATGT
R:
CATCACAGATGGTGCCCCAAG
Band lengths:
181-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]