RnoINT0032133 @ rn6
Intron Retention
Gene
ENSRNOG00000006623 | Cd302
Description
CD302 molecule [Source:RGD Symbol;Acc:1307606]
Coordinates
chr3:46333523-46335262:-
Coord C1 exon
chr3:46335092-46335262
Coord A exon
chr3:46333550-46335091
Coord C2 exon
chr3:46333523-46333549
Length
1542 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
ATTTTTCTTTTGCATTTTAGTCC
3' ss Score
8.58
Exon sequences
Seq C1 exon
ATGCAAGTTTCAAGTGGTTTGATCAGTCAAATATGACATTCGACAAGTGGGCAGATGAGGATGGTGAGGACCTAGTTGACACCTGTGGTTTTCTGTATGCCAAGACAGGTGAATGGAGAAAAGGAAATTGTGAAATGTCTTCTGTGACAGGAACACTTTGCAAAACAGCAA
Seq A exon
GTAAGTCCGAATGTCTTTTCTCCAGTCTAGGAGGGACGGGGAACACAGGGTTTGTTTTGGATACATATTTTAGGCACATCACATCTCATAAATTAAGACCTCAGAACATAACATGGCTGTGTGCTAGTCTCTTGAAAGTCAATAGTTCTCTTACATTTCAAAACTGGAGCTAGATCACGTGAAGCAGACACAATTTAATTCTATGTGCCTAATCTTAGAAGTTCCTAGGAGCCCATAAATTTCTTCAAAAGAATTTCCATGTTCTCTTTGCCTGTGCTCTGACTCAGAAGTGGTAAAGAAGAATACTGCATAATCTTAAAATACTTACATCACTTTACTTTCAGGAATCATGTTCTCTACAAAACTAGTATGTTTGTTTTGGGTAAACCAAATGTCATTAAAATTACATCATACTTCATGATGCATTCTGTATTAAAATACACTTACCTGATTTGTTAAAGTTTAACAAAATGAACAAGTTCTAAAATTTTCACATTGTTTGTTAAACGGTGAAGGTAATTTGTTCTAAAATTCTGAATAACTATTTTCTCAGTAAGCAAATGTAAATACTTAAAGTACTTAAGTATTTACTCTGGTCCCCAGCTCAGAGTAGTTTTATAGAAGTAGTATCCCAACTTTAAATGTTTTTGTCTTATTTTATTCCATTTATGTGTAAGGATGCTGTGAGCTGCGGCTGCAGAGATGTCTCAGTGCTAGAGATCATCACGGCTGCTCCTCCAGAGGACCCTGGTTTAATTCCCACATGGCAGCTCACAACTGTAACTCCAATCCTAGGGACTCTAATGCTCTCTCTTCTGGCCTCTAAGGGCACCCGTGCAGAGATGTGCCTACAGGCACAGCACCCACACATAAAAATAAAAATCTAAAAGACACTGTCTTCTGATCTCTACGTAGTGATGTCACACTCACTCACCCCCACAGTCACCCTCAGACACACACGTGCAAATGGGCTCTTTTCACTTACGGTGCTTGAGAGCACTGTTATATAAAACAAATACTAATTCAAGAATACCAGAAACAAAGGCTGGAGACATGGCTCAGAGATCTAAGAACACTGGCTGCTCTTGCGGAGGACCTGGATTTGGTTCCCAGCACAAACACATCCAGTTGTAGGTATTCTGATGCGTCTTGTAACCTCTACGGGCACTGGGCATGTGATGTGTTACACTTGCACACACACGAGAAACACTCAAGTACATGAACTCTCCAATATTAAAAACAAAACAGAACATAGAGCAGTTCCACGGCTGTTTACATTTCCTACAGAATCCACAACCAGGATTGTATTTCTCTCCTCTATTACTGTATGCTTTATTCTTTTTCTAGCAGCAAAGCCAATGCGTTTTTCAGGCCTAGATATCTATCTGATTTTTAAAAAATAAATCTGAAACAGGTAAGGTAAAGCAGTAGAAGTGGGGATATTAACATCAGGGGATATCCATTTTTAAGAGCTGTATATAAAGTAAATCTTATAAGCCATCCTTAAAATTTTTTAATTTCGATTTTTCTTTTGCATTTTAG
Seq C2 exon
TCCCATATGACAAGAAGTATTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006623:ENSRNOT00000008987:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(50.0=94.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]