RnoINT0032702 @ rn6
Intron Retention
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221677463-221678330:+
Coord C1 exon
chr1:221677463-221677611
Coord A exon
chr1:221677612-221678236
Coord C2 exon
chr1:221678237-221678330
Length
625 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
ATTCTTTCACCTCCCTTCAGGGA
3' ss Score
10.25
Exon sequences
Seq C1 exon
TACCTGGTGATGGACTACTACGCTGGCGGGGACCTCCTCACACTGCTGAGCCGCTTCGAGGATCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCTCTGCACCAGCTGGGCTATGTCCACAG
Seq A exon
GTGGGGCCCCAAGCTCTGTCACTTCCCAGTCTTCCTCCCTAAAGCCCTCTGCTAGGGCTTGCCAGTGTGCCTATCTTAAAGTTGAGGAAGTCAGAGCTCAGAGCAGGTAAGCCCCTGCCTCAAACCCACCCAATTCATGGTGGCAGAAGAGTGGTGTATTTGTTACCCATTTAGGGGACATCTGACTCCTGCATCCCCTACAGTGCACCTTGCAGCCCCTAGAATCAATAGTTGCTTTCACTGACTCCCATATGCACACACACAAAGACATGTATGAGCATGTACACACAGGAGATTGTATGAGCATGTACATAGGACAGGAACATGTATGAGCATGCACACACAGAGGAGATTTTGTGAGCATGTACATACACAGGAGCATGTGTGAGTATGTACATAATACAGGAACATGTTTGAGCATGTACATAAGACAGGAACATGTATGAGCATGTGCATAGGACAGGAGCATGTGTGAGCATGTACACGCACAGGAACATGTATGAGCATGTGCATAGGACAGGAACATGTGTGAGCATGCACACAGGACAGGAGCATGTACAAGCATGCACACAGGCTCATGTCTGAACACACATATGAAGCCCTCCATTCTTTCACCTCCCTTCAG
Seq C2 exon
GGATGTCAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456:ENSRNOT00000038016:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.4=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTGATGGACTACTACGC
R:
GCCATTGTTGTTGAGACGCAG
Band lengths:
238-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]