GgaINT0056356 @ galGal3
Intron Retention
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52456678-52460296:-
Coord C1 exon
chr5:52460148-52460296
Coord A exon
chr5:52456772-52460147
Coord C2 exon
chr5:52456678-52456771
Length
3376 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CACTTCTTTTTGTCATACAGGGA
3' ss Score
8.2
Exon sequences
Seq C1 exon
TATCTAGTGATGGACTACTATGTTGGTGGTGACTTGCTGACGCTTCTCAGTAAGTTTGAAGACAAACTTCCTGAAGACATGGCAAGGTTCTACATTGGTGAAATGGTGCTTGCAATACATTCCATACATGAGCTGCATTATGTGCACAG
Seq A exon
GTAAAATGCCAGCTTACTTTTGAAAAAAATGTGTATGCAGTTATATTAAATTAATTCTAAAGATATTGCTACAAATACAGATGGCTAGCCATGGGGAAGCTACTGTGGGCACATGCTTACTGTATGATGTATAATAATTACATAAGCTATATAATAGTTTAGTTACCAAATTTTGATGGATTCGTATTAGAAGCAGTGGCATTTATATGACTAACCTCTCAGTAAAGCTTTTAGTTTTAATCATGCTTCTTAACTTATTCTCAATTCACTTCATGAATATTTGTCTACAGTTGTCCAAGCCAGCATAGAAGTTTGAAGCAATTTGAATTCTCTGCAAATGTTTAAAAGTTACGCTAAACGTATTCACTGTAAGCCCATAATAACAGTGAGTCTACTTACCTGAACTGATCCTCAGATGGAAGAGGATGGTTTTTGGTAATGAGTGGACCTGTTTAATTGTGCACACATGTAGGAAGTATATTCCAGACCGGTACCTACAATCATGTAACTTAGATTGTAACATTTAAGAATATAACATTCCTTACTCTGAACAGGAGGAAATAGGCCAGGAAGGTGTATTTCTGTTTTGGGTTACCTCTTGGAGTGACTGTTTCAGAAGAGCTGTTAGTGGTACGGGGGAGACATTTGGTAAATATTTTGCCATTTTCAATATTCTTGGTCAAGTGGAAATCCCTATCCTTTGCTTCGTTTTCAGATTTAACAACAATGCATGTTAGAGCAATTAGAAAGCAAAATGATAGTAATACTGGAAACGCTTGTGGGTTATATCCTTATACGCTACACATGACCTTAGAGCTTGCTTTTAGTAGTCAAGAAGTTAGAAAAGGCAAACTGCAAGAGTAATGATGGTTTTCAGTTGTGTGAAAATTGCTTTTGGCTATGCAAGCCCATTTATGATGGGTAGCTGAAGCCAGTGCTCAGGAGAAGTGGGCTTTGGGCTAACATCGTATCTCACCTGGCTGGTAGGTTTTGACTTCAATCACATTACTGTGAAATACAGACAGTAATACTCTTGTGAGTAAATGTGGACAATATGTGGGGATTTTAAAATTTTATGTGGTTTTTTATGTGTTTGGAGAAACTCACCAGAGGCACTATTGCACCATTTCCAAGGAAGGTGGCTGCCTAACTGACCAACTACAACTTTGAGTGGGATTGAATGAATGCCTCTTGTGGAAATAGGAATAAATTTTTCTGAGACCAAAACATGCGAGAATGCCCAAGAAATTACTGCTTGGCAACTGCAGTGGATTAGGAAGATGAATGATTGTTCTGCGAGGATTTCAAGGGCCCTTTAAAGGCTTATATGACCTGTTAGCTGTAGATAGGAAACAGTGGAGCTCAGAGATGAGGCATTAAGCCTTTCTGAACAGAAACAGTGTTCCCTTAGGCAAGCAAGAGCTGCATGCAAAACAGAGAAGTAGAGATGTGTTGGATGAGATTGGCTCATGCTTCCAGTGGCACTGTGAATAGTGTTATTTAAAAACCAACAAAAAAACTGTGCACAGTTGTGTATAAGCTTTCGTAGTCTTCTGCTCTTACTGAGCTTGACTCTTATGGGACTGCAAGGGAATCTGGAAAGCACCTAGAACTGTAACAGTGTAGGATAAATTTAACAATGGAATATATATATAACAATAGCAAATATATGTATTCATTCTAACAAGTAAATATGCCCTTAATTTATGTTGACAGGCTTAGATTAACATTCTTATTTTGCCTTAATACTGCTAATGAGCAGCAGTATTAGTGAAGTTTCAGTAATAAATTTGAAATCATTAGCTCTTGGTTAAAAAGTAGCTATTTCAGTCTGTGTTGGAAAAATTCATAAGTTTGGCAGGATTTCTATACATATTAGGATTGTTTGTTAAACCTTAATGTTTTTCATAAGTTTGCTCAAGTATGAAGTATGGAATTCAGCAGCCTAAAAAGCAGACATTCTGAGCTCCCTCTTCTGTGTAACAAAGTGACGTTTGGAACTGCCTATTTGAAAAGCAGTTCAGTGTTGTGGTGCAACAAGATTGCATGTAAAACACATTTTATTTAATAATAATACAGAATATTATTTGAATAAATATGGTGTCTAGAAAAAAATAGATTTTTTTTTTTTTTTTTTGGCTAGTTTGAATAATATTTCAGAAGGGGTTGGTGAAATGCTGGCATGTTAGGAGTTGATCCTGAGCAGTGTTGAGTAAGGAATGGGAAAGACACTGGTATGAGTTGGCCTGCAAGACTTCGTTGTTCCAGTTTTTAGTCTGCAGAATTGGTGCATCAAGTTAGTTCTGCTTTCTCTACTTGTTTGTTTCTCCTCTTCTCCCCACACCTTCCCAACATACTAGCCAGGTGTTCTTAAAATAAAGCTGGCTATTCTGAGGCTATTAATATTTATACATATATATGTAGTATGCATCAAGATTGTATTATTAAATTGGGTGTTGCAGTCTATCTTTTGTGAATTTGAGTACAAACTGGCGAAAGAAACTGTGATTGATTGGACTAAATTCAATTAACATGCTCTCATTAAAGTTCTTTTTGGCTGCCTTCCTGGTACCAAAATAATATCAAGTAAAGAGCTACAGTGAAACGGGAATCTTAGTTCAGTGTCATTTAGTAGTCTCAGTATGCAGAATGCCATTTACATCTTCCTGTATACACATCTCAGTAGGAATGACGTGCTTTGACCCTTTAGACTTTCTCCCATTATTGTATCCTGCTGAAATGGCATTATCCTGGTCCCAGAGCCAGGAGAATGCAGAGATTTCTGGAGTAACTGCTGCATGTATGCAGGATGGAAAAGTCTTTAGGTACCCGTGAAAGCAAATGTGATGTGCAGTTACTATATAGAAGAATGATCTGTAATAGCAAGTGGAGAATACAGGCCAGCAGAAATTCTGGACAAAGTTTAGAGAAGCAGTGAAAAATCTCAGATAGGAAGCTATAGGTTGATTATAAGTCTTGGCAAACAAACGAACAACCATCAGATTAAATGGTGGTTTTTAATATTTTCTTTGCTATTTTCTCTTGCCTCCAAAAGCATATTGTGATGCGTACAATCTCAAAACAATGTTGATGAAGTAAACTGCCTATCTGTTCTGTTCTCTGTAATTGTTCTGCTTGGTTATTTGACCAGAGTTCAACTTTGAGCTGAAAGTCCGATGTAGTCATAAGTTTCAGTGTTGCGGGCAACGTTTTAAGTTTGGCAGATGGAGAGAGTCATATATAGTATAATAAAAAAAGGTTGCATCACTGTATAACCAACATAAATTCCTTTGTTATTTTGATGGAATCTGATGTAATCTTTACAAGCAGAGCTCATACCATATATTTAATTTTTTCACTTCTTTTTGTCATACAG
Seq C2 exon
GGACATAAAGCCTGATAATGTTCTTTTGGACATGAATGGCCATATACGACTGGCAGATTTTGGGTCCTGTCTGAAAATGAGTGAAGATGGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432:ENSGALT00000018644:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.4=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]