RnoINT0032666 @ rn6
Intron Retention
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135780383-135786808:-
Coord C1 exon
chr6:135786660-135786808
Coord A exon
chr6:135780477-135786659
Coord C2 exon
chr6:135780383-135780476
Length
6183 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TCTGCTTATCTCACCCACAGAGA
3' ss Score
10.21
Exon sequences
Seq C1 exon
TACTTGGTTATGGATTACTATGTGGGTGGTGACTTGCTGACCCTGCTGAGTAAGTTTGAAGACAAACTTCCAGAAGACATGGCGAGGTTCTACATTGGCGAGATGGTGTTGGCCATCGACTCGATCCACCAGCTCCACTATGTGCACAG
Seq A exon
GTAACTGCCTCCTCACGAAATGTATGACCAACAGTACATCAAACAGGGACAGCCTCAGTTCCAGGCCTCCCGAGGAGTCCTGCCCATGACAAGTCTCCACTGAGTGACTAAGTGACACGGTCGAGGGGTGGTTTTCTGCATCACACCTTGAGCCCCACAACACCCAGAATGCTGTGCTCCCCTTGCACCAGTTATGGTGGCTGAAGTTCCAACAGCCTGCCTTTTTCGCTTTTAGGGGTCCCTATTTTCCTGTCCTCACTGGCCTCGTGACTACCCACTGTACCCCCATGCTCTTAGGTGTCCACACTGACCTGTGACACCCTCGCAGGGGAGGAGAGGGCTTAAGCATAGGTGTTCTCTGTCAGAGCAGTGGGAAAGGCCAGAAGGCTCACCTGCAGGCAAGCTCCCTTAGGCAGGCCACCCTTTCCTTTCTCATGTTCCCTGGTTGGTAAAATAGCTTCTCAGAGAGTCAGTATACAATGTTATCTGACTGTTACAGCTGAGCCTTGTGATTGTATAAAAAGAGAATGTATCTTTAATTGTCTCTGTGTCTGTCTGTTTCTGTCTACCACCTGAGTGGGGCCTGGGGAATCCAGAAGGTGAGGCCAGATTGCTAGAGCTACAGTTACAGGTGTGAGCCACCGATGTGGGTGCTGAGAGCTGCAGTTACAGGTGTGGCTTCCCGATGTGGGTGCCGAGAACCAGACTTCTGTCCTCAGAGGGCAGCAAGTGCTTAACCACTGAGCCATCTATGCAGGCCCAAAAATCCCTTTGCGTGTGCAAATGCATGTGCGTCTTATTGACTTGAGCCAGAGTCTCTCTCTCTGGAAGCTGCTGGTTCAACAAGGCTGGGCAGCAAATGAGCTCTCAGGATCTTCCTGTCCTTGTCCAGTGTTGGGGTCACAGGCACTGATGGTTACACCCAACTCTCTACATGGGTGCTGGGAATTTGAACTCATGCCCTAAGGCTGAGCCATCTCCCTAGCCCAAAGTATATCTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCCCAAAGTATATCTTAAAATGTTGTTTTGTTTCTAGATCTGTTTGTTTTAGGGAGGGGGCACGTGTTGTGACACGTATGTGGTAATCAGAAGACAACTGTCAGGAGATGGTCTGATTGGTCCCCATTTCAGGGACTGAACTCTAGTCATCGGGTTACTGAGCCATCTTGTTGGCCCAAGGCTGTAGTTCTTGGATTGATTTTTGTTTCTCTGGAGTAAAAGTCTCCCTGGTTTTTCTGTGTGCTTTTCTGAGACTCTGTCACGAAGTCCCTTGGATCACACTCGTGTTAGAAAGCTCTGTACGCTCAGACGGAATTGAGTCTCCTTCATTTGTGCTTCATTCGTCTTCAGTCCCGCTGTCCCCGGCTTACCCCTGGAGAGCGTTCTGAGTGGACAGCTGCCTTCGTACCTCTGAAACCAGATCCTGTGTATTTCTAAACGTCCGTCTTCCCTTTGTGAGTCTCAGTGTCTCTTCCGTCCATGCTGGTGGTTTGGCCTCCTCCACGGAGAGTGGCCAGCTGCACGTCACTTGCTGGGATTTGAACATCACAGCTCCTGTCTTCCTTCTCCACAAAGCTCTTCAGAGAGAAAAGTCCCTGGTGTTGATTTGTCTTTTGCTTTTCTGTTATTCTGGGATGGATCCCAGGCCTTGCATGAACTTAGCATACACCGTGGTGCTCTTCTAGATTTGTGTCACTTGTGAAAGCCTCTGTAGACTCCTTATGGGAGCACAGCACCCACTGTGGACGGGAGCACAGCACCCACTGTGGACGGGAGTACAGCACCCACTGTGGAAGGGAGCACAACACCCACTGTGGAAGGGAGCACAACACCCACTGTGGAAGGGAGCACAGCACCCACTGTGGAGGGGAGCACAGCACCCACTGTGGACGGGAGCACAGCACCCACTGTGGAAGGGAGCACAACACCCACTGTGGAGGGGAGCACAGCACCCACTGTGGAGGGGAGCACAGCACCCACTGTGGACGGGAGCACAGCACCCACTGTGGAAGGGAGCACAACACCCACTGTGGAGGGGAGCACAGCACCCACTGTGGACGGGAGCACAGCACCCACTGTGGAGGGGAGCACAGCACCCACTGTGGACGGGAGCACAGCACCCACTGTGGAAGGGAGCACAGCACCCACTGTGGAGGGGAGCACAGCACCCACTGTGGACGGGAGCACAGCACCCACTGTGGAGGGGAGCACAACACCCACTGTGGAGGGGAGCACAGCACCCACTGTGGAAGGAAGGGAGGAAGGATGGATGGATGGACAGATGGATGGACGGACGGACGGACGGACGACTTTTCACTGAGAGTGCTGTGTCATTTCCATGGGAGGCAACAGGTGGGGGTGGAGTGGGGAGGGTGGTACTGGCTCACTGGAGTACCCAAAGGAGCTGCCTTTTAATTCAGAGAGGTTCGATAGTGCATCCCCCATCCCTTGTTCCTTACGTGGGGATGCCTGCCTGTGCAGGTCACTGCAGCTCTTGCACTGCTTTCACTACTGAAGACTGTAGAGCTCCACACTCTCCCACTCAGACCTGCACACAGCGCCTCACTGTGGGCCAGCTCCCACCAGCTGCTCAGTAGGCCTGTGCTTCCCGACACCCGGGATCATAGGTGTGCTTGTCACCAGGCCGGGCTGTTGCAGATCAGTGTTTCAGAATGTTTTTATCTGTATGTATCTGTGTTTGTGTGTCATGTATGTACACCATGTGTGCAGAGAACAGGTGCTTGTAAGCTGCCTAACATGGGTACTGGGCACTAGGTACTAGGCACTAGGTACTAGGCACTAGGTACTAGGAACTAGCAACCAAACTTGGGTCCTGCAGAGGAACAGCAAGTGTTTTTTTTTTTTTTTTTTTTTTGTTTGTTTGTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCACAGCAAGTGTTCTTAATCACCAAAAAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCGTGCGCGCTTGTGTGTGTGTGTATCTGTGCGTGTGGTGTGTGTGTTGGTGTCTGTGTATGGGTGTGGTGTGTGTGTATGTGTCTGTGACTGTGTGTGTGTATGGGTGTGGTATGTGTGTCTGTGCATGTGTGGTGTGTGTATGTGGAGTGTGTGTGTGTATGGGTGTGGTGTGTATGTGGTGTGTGTGTGTGTGTGTGAGTGTGTGACTGTGCGCGTGTTGGTTTGAATGTAGGCACATGCACATAATGGAAGTCAGAGAGCAAATTGCAGGAGTTATGTCTCTACCACGAGGGTCCCGGGGATCAAACTTAGGTCCTCTGGTGGCGTCCATTACTCTTACCTGTGGAACTGTCTCACTGGCTCCTGGGTTATATATTTGAGCAGGTATACGTGGCAAGTGACCACTACAGTAGAGCCTTGGGAATATGAATTAGCTCTGCCTGTTTTTACTTATATATGCTGAGCCATGCTACACATAAGTTGTTGGGTTTTGAGGTGAGGTTTTGCCAACAAGGCGGCCTGGAGTGGGATTCTTTTGCTACAGCCTCACTAAACTGAGCTTACAAGCTCACACCATCACTCCTGGCTGTCTGCAGAGTGCATTACCTTTCTCCCTTCTAATGTTGGAGCCCTGCAGATTGAATTCAGGGTCTCACTATACCAGTAAGTGCTCTACTGGACTGCACCCCAGCTCTAACATTTCCTTCTGAAACACTGGAGTAATTTCTAGCTCGTATAGTGATTGCAAGAAAAGTAGAAAAGCATCTGCCCAGATTCACACACCGCTGTCACGTTGCCCAGTTCTCCCTCTCCCGTGTGCACACACAACTGTGCACAGCATCTTTCCAGAGCCATGTTGTGTGTGTTAGCGCTTTAGGACTAGGTACATTCTCTTCATAGAGTGTGTCTAGCCTCAGGAGACCTCTTGTTTTGGTTTGGTTTTTGGTTTTGAGACAGGGTCTTTATAATATAGCTCTGGCTGTCTTGGGCTTGCTGTGTAGACCAGGCTGGCCTCAAACTCATAGAGCTCCCTCTGGAGTGGTGGGATTAAGGGCCTGTGCCCCTTTCCCCGGCCAGGGAAGCTCATTCTTGGTCTTCGTCGCTGTCTGTGCTCACATTGGCCCGTGATCCTTATATATCTACTCTTCTGTCACTGTGAAACACCACAGCCAAGGCCTTAAGAAAGAGGGAGTTCCTTTTGGCTTACAGTCCCAGGTGGGGAAGAGGCATGGTGGCAGGGTTAGGGCCGAGGACCCTGAAGCCAAAAGCGCACACATTGAATTGAGAGCACGAAGCAAAGAGAAGCCGGAGCTGGAAGTGGCTTGTCACTCTCTGAAAGCCACCTGTAGTGACAGACTTCCTCCAGCAGGGCCGAGCCTCCGTAGCCTCCCCACAGCATCAGCTGCAGACCACGGGTCCTGGTGCCTAAGACTAAGGACAGTCCCCAGTGAGAGTCAGATCTAGGGTCACGCTTAAGCCCACCTTCTCCCCTTTTAAATCTGGAACCCTTCCTCATCCTCCCTTTGTTTTATGAACGTGGTACTTTTAAAGAGTGCTGTGCCCCACTCCTGCAGTAGAACAGGCATGCTGGTCCTCTGGTTTTACAGTAAAGCATTCTTCAGTTCACACTCAGCAGATACCGTCCATCAGCTCTGGGACAGCGCCGAACCAGGTTGCCCAGTGGTTCCTTTGCTTTTTCCTGCACCTTGTGTGCCCTGAAAAGGCACTTTGAACCCATGCGGGTCTCCTCCCATTTGAGTGGCCCCTGATGGGTTCTAACTGGGCTGCATTTCACTGCTGGCACTGGGTGACCTTACTTCCAGGTCCCCAGTCTGTCTTCTGCCATAGGAAGTTGTCCACCTCTCTCCCTGATTGCCTGCCTATTTCCAGTGCATTCCTCAAGGTCAGTGAGCCCTCTGGGAGGTTAGCGAGCACTCTCCACTGCCATGCCTTGCCTCCAGCCCCTGTTACGTCTGTCTGCTGCTATGTGCAGACACCCTGGGTGTGGGCATTAGGTGATCTGTTGTGTCTCAGCTGCACACAGTATGGCCCTGGGTAGCAGAATCTCGTGTCTGCAGAGTAATTCCAGAACCAGTATTTCTGGATCAGAAGACATACCTGCTTGCTTTCCGATCCGTAGTGTGTGAAATGCTGTTTCCTCTGCATTTGTAGTGGAATCCCTGTGTTCCCATGCAGGGCTTTCCCATATGGCTGCAGTGCAGTCTGACACGTAATCCTGCAGTGGATGCCAAATATGGTTTGGCTGTTGGACGTGTGCTGCTGGAAACATGCTGCTGGCGTGAGCATGGCTTTGGTGGGCGTGTTCTCTCGCTTCCGTGTAATCTGTAATGATCTTATCCTTAGACCTCAGCCCAGCATTTAGGCATTAGAAAGGCAGTTGACTGCGTGGGCTCTGTGCGGCTTGCCTTGGCTGCGAGACGGTGCCGTTTGCTGTGGTGGCTGGCAGTGTACGGCTGCTCAGTCTGTAGAGCGGTTGTTAGCCTGCGGCACTGTCACATCTCCCCTCGCTTCACCGCCTCCCTCGGTGCTACATGTCCTTTGATCTCCTTTTACAGTTCTCCACCGACTACACTGGCTGCCACCATGGCAGTGCTGACAGAGAGTGGGGCCGGGGAATGAGACAGAAGGAGAGGGAATGAGAGAGAAGAGAGAGAACGAGGGAGAACGAAGGGAATGAGAGCACAGAGCCGGAAGAGGGCATGAGACCCACCGAGCTGGACTTACAGGCATTGGCTGCTCAGTGGTTGCTGGGGTCCAGAGACTGAGGGTCCAAGCACCCTTTACTGTTGAGCCAGCCCCTGGCTCTGAGATGTCATTTTCTGGTCCTGTGGCTGATGAGCCTCCTCGAGAAGACAGGAGATACTCAGGGAACTTAGCCAGGGGCAGGTGGCAGGGGTCGACGTGCAGACGGGAAGAAGGGGTGCCAATGGTGACATGCTTGGTCACGGCTGCTCACTCTGTGCACCCGGTGGGTAGCACTGATAACACATTCTGCTTATCTCACCCACAG
Seq C2 exon
AGACATTAAACCCGACAACGTCCTTCTGGATGTCAACGGTCACATCCGCCTGGCTGACTTTGGCTCGTGCTTGAAGATGAACGATGACGGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675:ENSRNOT00000039059:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.4=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]