BtaINT0035070 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69317174-69322958:-
Coord C1 exon
chr21:69322810-69322958
Coord A exon
chr21:69317274-69322809
Coord C2 exon
chr21:69317174-69317273
Length
5536 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
CACCTGTGTATTTATTTTACTAA
3' ss Score
-1.19
Exon sequences
Seq C1 exon
TACTTGGTCATGGATTACTACGTGGGTGGCGATTTACTGACCCTGCTCAGTAAATTTGAAGACAAGCTTCCAGAAGATATGGCAAGATTCTACATCGGTGAAATGGTGTTGGCGATCGATTCCATCCATCAGCTTCATTACGTACACAG
Seq A exon
GTAATCACCTTGTTAGGTGTTTTATGGACACCACCATTAACGTGTTGAAGCATTCCTTTTAGAGCCCCATCGCCAGGCTCTGCGGAGAATTTGGGAGGTTGGGGTCCTCCCTTTGGCTGCCACGATGTGGGGTGCCTTCCCGGGTCACTGCTCTGTGGCAGCTGCTGTCAGCTAAGGTCACCTTGTCCTTTGGTGTCTGCCTGCCATTGGCTCGTGCTCTGCCCTGCCCGCCCCCCCCAGAGCTCGTTCCCGGTCACCCACAGAACATTAGGGGGGTTGAGTTGAGGGGGCTCCCATCACAGCAGTATAAAGGACTCGAACGAGTGTAACTGCTCCTGCGTGGCAGACGGGGGTGGCAGCATGGGACAGGCCCCCTGCTGGTCGCCGCACGGCCCCCGCCGCCAGGACCGCGGCCTTAGTCGTTGCCCAGCCTGCACCTCTGTGTCCGTCTCACTCTGCTGTTTAAGACAGGGATTCAGTCCTGCGGGGTTGGGTGGTGGTAGGGGCAGGGGTTGTTGGTTCTGTTTTACTTCTTTTCATCAAAATGTTTCATGGCGGTAGTTTTAGAAATTCAAATAGTTGTACAGGGCTTATAACAAAACATGAGTGTTCAGTCCTGCTCCACCCTGCCCCTGACGCCCCTGCCATAGGTAACTATCGTCAATTTATAGTTGTTTCTTCTGGTATTTGCCTGCATATTTCCAACTAACAGAAATGTGTTTCTATTGCTGCTGCATTTTGTGGGGTGAGGGTGGGGGTCTCAGAGCACGTCTGTTTAAGTGGAGGTTTGACTCTTTTACATAAGTAGGTACATCTCTCTCATCCCTCCTTCCCGCCTGGGCCCAGTTAGTGTCATGCGGTTCCCCCTCGAACACCGTGAGTGTGAACTGAGTGTGAACTGCACGGGTCGCAGATTCTACACCGGCTTCTTTCACTAAGTACTTTCCACGCCTCTGAGCCTCTCAGGGATTTTCCTAACCAGATGCAGCTCGTGCTTCTAGGGTGGCGATGGTGCCCAGTGTCAAAGGAACAGCCCTTCAAGCCCTGCCATGAGTGTGACCGTGTTGCCCTGGGAGGGGGCAGCTTTCCAGGGGCCACGCGGTCCTGCCCGGGCACTGGTCTCTGTGCCACGGGGAGCCCGGGGTACTGCCCCCTAGCGGGTGCTGCTTTCAGGGCACCGAGGTCTGGGCCAGAGGTGCTCTTCCCTCTCCTGTGTCCTGTAATGTCACTATGCCTGCTTTTATAACAGTCACTGTTTCTGTTTTCAACATCAGATTTTATACTCTTCTTGATGGAATTTTGCTTAATTCACTACGGAGAGATGAATGTCTTTGTAGTTGTCACAGATCTCCAGGGAAATTAATTTGACTGCCTTTTGAACAGTTTATTCTTTCCTGTTTTTCCCTAAGTAGAAGGCTTTCTGTTGATTTTCTTAATTGGTTGTGTAGAAACTTTGCTCTATCTTTTAACTTCAGGGCATAGTAGGAAACATTAAAATGCATAATTTGACATTCTTAAAGTCAACGCAGTATTCAGACCAAGTGCTTGAATGACCTAGTCTAACAACACAGTTCGCAGAGTTAGATAGAACAGGAAGTCAGTCCTACCCCTGTCTCAGGGGTGTGCCTGAGTAAGTTAAGGCTGCCTGTGGTGGGGCCGGAGGTGAGTGACTCCCATCAGAATGACGGGAGGTTCATAACAGCGGGTTCAGACCATAGCTTTGGGCCCCTTTCTCATGGGAGGATGTGGGCCATGGCGACTTCTTAGGGCAGTGCCCACTGCCCCCGAGCCGGGCTCCTGCAGACAGAGCGGCTGCGCCCCACCTTTGGCAGCTGGACCCCTGCGAGGCTCACTGCAGGAAGCAGCGGTGACCTCCGACCTGGCCGAGCACGCCAGTGGGCACCACCGTTCCTAGGAGGTCAGCCTCAGAAACCAGCAGAGCAGAGACCCAAGAGGCACAGGCTCCCAGGGATTGCAGCCTGGCAGGGTTTTGTTTTTAATTTTAACATTTCCATTCAACTCTTTGTTTTAAAAAAAAAAATTGTTTATTTGGCTGTGCCGGGTCTTACTTGTGACACGAGGGATCTAGTTCCCTGATCAGGGATTGACCTCAGGCCCCCTGCACTGGGGGCCCAGAGTCTCAGCCACTCCAGGGAAGTCCCACAGGCAGGTTTTGTAATGTATTAAATTGATTGGTTGTTTTCTTCTAATGGTTTTATTTTTTACATAAACTCCATTTGGAGTTTATTCTTATATAAAGAATGGATCTGATTTTATCTCTAATTAAAAGGCTCTTCGGTTGTCCCAGCACGAACTTAGATGTCTTTGCCCACTGATCTGAAGCAGCATCTCCATGATACGCTCAGTTTCTCTGAGTTTGGTCTCTTCTGGATATGTTATTCTGTTCCATTGTCTTTGTGTCTCTGCTCTGGGACCACATCATGGAGGCTTGAAATTCCATGGGCCCAAGTCTCCCATCACACCTCTTTCTTTTCAGTGTTTTCCTAGCTGTTCTTACATGTTGGTTGTTCCATATCAGCTTTTAATATCAACTGGTCTGGCTCCAAAAAAAGCAGGACACTTACTTATTTTTAAATTTGATGAGCCTTTCAGTCTGTAGATTCAGGTCTTTTTTTTTTTTTTTTTTTAATGTCTGGAAAGTTGTCTTGGGTTTCAGGTTCAGATATGATGTTTTATTGTTTTGATTCTTCAGGGACTCTTGTTACGAATATATTGTGCCTTCTTTACCTGTCTTCCATTTCAGTCTCCAGCTGCTTTGTCCCTGACCCTTTTTAATTATTTGTCCCATTTTTACTTTTTCAGATCCTTTCCTCCATTTCTTCACTGCCTTTCATTTGATTTTTTTTTTAATTTTTTGTTTATTTTTGGCTATGCCGGGTTTTGGTTGCTGCACAGGCTTTTCTCTGGTTGCGGAGCGCGCGGGTGGACCTCATCAGGCTATCTTCTCTCGCCACGGAGCGCGGGCTCTAGGGCGCGGGGCTTCAGGAGCTGTGGCGTGCACACAGGCTGCGTTGCTCTGAGGCACATGGGCTCTTCCCACATCAGGGATTGAACCTGTGTCTTCTGCATTGGTGGGAGGATTCTTTACCACTGAGCCGCCAGAGCAGCCCTAGATTTTTATTTACATTGATTCTTCTGTGGCATCTTACACTTTAGTTTTCATTTCTGTTAAGATCGTCTTTTTCTTCTATTTCTCCCCTGGGTTAAATCAAATCTCTTTTCTCTTCTCCTTATTTTTGTCTAGTTCTGTTCTTTGGTTTTGCCATGACTTGTCACAGGTGGGATCTTAGTTCCCTGACTGGGCATCAAACCTTTGCCCCCTGCAGTGGAAGCTCAGTTTTAACCACTAGAACAGGAAAGTAGTTTTTATTTTTCTGAGTCATCAAGGGATTCTTTTTTTTTTTTTTTTGGAGGAACTGGTTCTTTATTTCAAAAAGACATTTATCAATTTTCAGTATCAAAACGGTTACACTATTGGTTTTTTTTTTCTCCCAGTTGGTCCCCAAAGAGACACCAAAGGAGAGAACATTTTAAGCCAATTAAGCTGCAGGATGCACACCTAACAGACCTCACTGAAACCTCATCAAAAAAGGGGGATTGGGTAGGGAAAGAAACTTTAAAAGATCAGCACACTGCTAGCCCACAGACTGTAGAGAGCTCTTACAGGCAGAGGGGTGACCAGTGTGCCTCAACCCCAAAGAAGCAAAGTTCCAAAATAATATAAAATTTAAAAGTTTTGTACATATGCTTTTCAAGATTTCTCCAGCACTAACCGATACAAAGCACAATGAGATGGCACTTTTAGAGACAGCAGCTTCAGACCCAGAAAAGGGTGATGAGATGAGTTTCATATGGCTAAATCAGTGGCAAAACATAATTTTCTTTCCTTTCTTTCAAGGAGGCAGGAGAGCAAATAAGTGGCCACTTCAACATAAGGGGCACATGATCCATTCTGTGAGCAGTTGGGAACAGGGTAGAGCTGGGACAAGGATTTGGTCTCAGAGGTTTCACCATCTTAATTGTTTGGTCGCTTCTGATGAAAAAAGAAAGAAAAGGTTGTCCAGAGATACTGTAAAGCTGAAAACCTGAACAGCACTTTTTTTTTTTTTTGGCTAACTCCTCCTGGAATCATCTTTCTGGTTTGGCAGGTACTTTTTACAGGGCAATGAGGTTTCCCCAAATGGAGCCTTTCTCTGGACTGCTAGGCTCTCAGTAAGGCAGGCCCAAGCCTTTTCTCTTTCTCTCTGGAGAAGGCAATATGCATTAAGCTGAAATGTACCTTCCAAAAGTGAGAAAGGGATTAGACTGCTGCTTCAGAACTACGGAATTATCTGGAATGTTTTTTTACAAATGGTTGTTTTCTCTTTCGTACTCCTGAGTATTTATTTAAGATTTATTTCAGTCTGGAGTGCTTGGCTAGAGGGATTTTGGGTTTGTTTTTTTTTGCTTTACTTTTTTTGGATTAATCATCTTTTGCTCACATGTGTTTGTGAGACTTTCTGTGTTGTGGGAGTAGCAGGGGCTTTTGTGTGTTTGCATCAGGGTGTAGCATTGTGTCAGACCAGAGTGGCCTGGCTTCTGTGTCCCTTCTGCAGGGGGACTTGAGGTGGTCCATGCTCAAGCCCCCTTGCAGAAGGTGGGCCTTGTCACAGCCCCTCTTGGCGGCTGTTACCAGCTGTGCTGCTGGGAGCATCCTTGCGGTCTTCTTGGTGAACACCTTCCTTGTAAAGTTTGTGTTCCTTGTCATGCTGTCTGGTCACACAGACTTATTCTGCCAGGAAGGAGGACTAGTCCCTTGAAGTCCACCGCACTGCCCCCCACTCCCCGCCCGGTGTTGGCCAGTACACAGGACGGTCGGTAGGATGACGGCTTGAGTGAGAGACTTCCCTTTCCTGTGCGGGGTGACTGGCAGACTGCTGCGCTCTGAGCTTACCTGTCATCGTCTATAACATACACTTGGGGAGGGGCCCGTGGTGCTCCGGGATACACGTGCGACACCGTCCTGCCCCGGCTCCTCATGCGACCCGATATGCATCAGGTCCCGCCCAGGCGTCTCCTTGGTGGCCTCGGCCACCTGGCCCCCTTTGCACGCTGTCCCTCTGCCTCCTCTGTTCGCTTGTGTCTCTTCGTAGCAGTTGCCACACGGCTTGTGCCTTGTGATGCCGAGGCCCTGTGCGGCTGTGCCTGGCGTGTTCATGTCTTGACATCCTGGCCGGAGGGAGGCTTCCTGAAGTCAGGAAGTGCTGTCCAGCCCCTGCTGTGGGCCCGGTCGAGAGCAGCGCCCAGCATACGGGAGGCCTGGGCTGGCGGGGGGGCGGGGGGGGGTCCGTGACCAGTCCCAGCGGTTAATGGGGGTTCACCATTAACTGCTGCACGCCAACCACACCGCCCCAGGGGTGCTCTCCTAGGTCCTGTCGTGACGAACTAGTGCTTCCTGTGGTGATTCTCTACTAGTGAAGGGCTGTGACCTACCTGAGTGTTGCATGGAAACGGTTCACCTGTGTATTTATTTTAC
Seq C2 exon
TAACAGAGACATTAAACCTGACAATGTCCTTCTGGATGTAAATGGTCATATCCGCCTGGCCGACTTTGGATCCTGTTTGAAGATGAATGACGATGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456:ENSBTAT00000021879:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.2=100)
A:
NA
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]