RnoINT0034867 @ rn6
Intron Retention
Gene
ENSRNOG00000021138 | Cers2
Description
ceramide synthase 2 [Source:RGD Symbol;Acc:1310059]
Coordinates
chr2:196494197-196494585:+
Coord C1 exon
chr2:196494197-196494325
Coord A exon
chr2:196494326-196494478
Coord C2 exon
chr2:196494479-196494585
Length
153 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGG
5' ss Score
4.36
3' ss Seq
CAGATGGACTATTTCTACAGTCT
3' ss Score
1.52
Exon sequences
Seq C1 exon
GATTTTAAGGAACAGATCATCCACCATGTGGCCACCATCATTCTCCTCTGCTTCTCCTGGTTTGCCAATTATGTCCGAGCAGGGACCCTCATCATGGCTCTGCATGACTCTTCCGACTACCTGCTGGAG
Seq A exon
GTTAGGCTTCCTCATAGTAGAGGCCCCAGTGCAGCCCCCCTGCCCCCATCTTCTAGGGGATTGAGAGGGGATTGTCAGTGCTGCTAACCACGTACACATACTAATGTCTAAGGGAGTGAAGAGCCCATGATAACAGATGGACTATTTCTACAG
Seq C2 exon
TCTGCCAAGATGTTTAACTACGCAGGATGGAAAAACACCTGCAACAACCTCTTCATTGTCTTCGCCGTCGTTTTCATCATCACTCGACTGGTTATCATGCCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021138:ENSRNOT00000028699:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAAGGAACAGATCATCCACCA
R:
CAGAAGGGCATGATAACCAGTCG
Band lengths:
234-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]