RnoINT0034896 @ rn6
Intron Retention
Gene
ENSRNOG00000052990 | Cers5
Description
ceramide synthase 5 [Source:RGD Symbol;Acc:1311597]
Coordinates
chr7:141390224-141390552:-
Coord C1 exon
chr7:141390424-141390552
Coord A exon
chr7:141390331-141390423
Coord C2 exon
chr7:141390224-141390330
Length
93 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
TCATTTTTATCTTTGTCTAGGCT
3' ss Score
8.48
Exon sequences
Seq C1 exon
GACTTCCTGATGATGTTTATGCATCATTTGATCGCCGTCACGCTCATCAGTTTCTCCTACATCAACAACATGGTGCGAGTGGGAGCCATCATCTTGTGTCTGCATGACTCCGCCGACTCCTTGCTAGAA
Seq A exon
GTAAGAGCCCATCCTGATGGTCGGGATTCCTATCTCCTTTTCTTGACATGTGAAGACTGACTTTGTCCCCAACTCATTTTTATCTTTGTCTAG
Seq C2 exon
GCTGCCAAGCTGGCCAATTACGCCAGACAGGAGCGGCTCTGTAACACCCTCTTTGTGATCTTTGGTGCAGCTTTTATGGTTACTCGTCTAGGGATCTTCCCTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052990:ENSRNOT00000080109:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATCATTTGATCGCCGTCA
R:
AGCTGCACCAAAGATCACAAAGA
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]