RnoINT0036320 @ rn6
Intron Retention
Gene
ENSRNOG00000014698 | Chrnb1
Description
cholinergic receptor nicotinic beta 1 subunit [Source:RGD Symbol;Acc:2349]
Coordinates
chr10:56402250-56402973:-
Coord C1 exon
chr10:56402834-56402973
Coord A exon
chr10:56402295-56402833
Coord C2 exon
chr10:56402250-56402294
Length
539 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
CTTTAAATTTTCCATTCTAGAAC
3' ss Score
10.12
Exon sequences
Seq C1 exon
GAGCCCGCGGGTCGGAAGCCGAAGGCCAACTGCTTAAGAAACTTTTCTCGGATTATGATAGCTCAGTAAGGCCGGCGCAGGAGGTGGGAGACCGCGTCGGGGTCAGCATCGGCCTCACCCTGGCGCAACTCATCAGCCTG
Seq A exon
GTGAGAGAGGTACCGCGGGTGGAGGTCGTCCGGCAAGTCCGACTGGGGGCGTGGCTTTAGACAAGGCTCCGAAGACAGTCCGAGTGCAGGTTATGCTAAGAGACTAACAGGCCCTTAGCGGTGATTGGGTAAAAATCAGACCAATGAACTAGTTCGTGGGCGTGGCTTCTATGATGGGCACAGAATACAGTTCCCCTAACACCTTGTGGGCGGGTTTTGAGGCAGAGCCGGGGCAGAAGGACCTGCTATGGGGAGGACCTCGAGGCGGGGCCCGGTAATGTTCTAGCAAAGTCCAGCAGAGCTTGGTGCCCAAACAGTCAATAAACAACCCTGAGAGGAGATTCTGAGCTGTATTTGATCAGACGTTGGGCGGGGCCCGTGATTTAACCAGGAGATAAAAGGAAAGCAGGCATCAGGGTCTGGTGTTTCCAGGTTGATACGAGATGGGAGTTTGCACCCAAGAAGGTGCAGTTTAGAGAAAGGAGCCCTTGTTTCTACCCACTTCATTTCACTTCTGCCCTTTAAATTTTCCATTCTAG
Seq C2 exon
AACGAGAAGGATGAAGAAATGAGCACAAAGGTGTACTTAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014698:ENSRNOT00000019947:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(17.8=83.0)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(6.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]