RnoINT0037273 @ rn6
Intron Retention
Gene
ENSRNOG00000029682 | Clic1
Description
chloride intracellular channel 1 [Source:RGD Symbol;Acc:1303043]
Coordinates
chr20:5042939-5045456:+
Coord C1 exon
chr20:5042939-5043045
Coord A exon
chr20:5043046-5045274
Coord C2 exon
chr20:5045275-5045456
Length
2229 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TAGCTTCCTCTCTCTCACAGACC
3' ss Score
9.98
Exon sequences
Seq C1 exon
GTACCCAAAGTTGGCTGCTCTGAACCCCGAATCCAACACCTCGGGGCTGGACATATTTGCCAAGTTTTCTGCCTACATCAAGAACTCAAACCCGGCCCTCAATGACA
Seq A exon
GTGAGTGTTGTGGGTCAGGGGTTTGGGTCCTACAGAAGATTCTAGGGTTGGGGCACCAGGAGCCCCCGTGAGCTCGGCTGTCAGGGAGACGGAGCAGATGTTCCCAGAGCTCTTCCAACCCTCTGTTCCTGCCTTACCCCTCTAACCTCCCTGCTGTCTCATTGCCGAGACCTTTGGGGTTTGAGAGTTTGTTTTATTTATTTATTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTGGTTCTTTTTTCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATGCCTAACCCCTTGTTTTATTTTTACATATGAGAGCGTTGTCTGTGTATCTCTGCACCTTGTGTGCAGGGCCTGAAGGGACTGTTAGATTCCTGGGATTGGAGTTACAGATGTTGGCTGGGAATCAAACCCCAGGTCCTCTGCAAGAACAGTCAAATGCTCTTAACCACGGAAGTCCCAAGACCAGCTTTTAAATCGGGTACTGGCATCTGAAACTGAATTCATACGCTTACACATCACCCCGCTGTCCCCACTAGGTGGTCCTCTCTCTACCTTCCAGAGTTCATTCTTTTCATTTGGTTTTGTTGTTTTTTTCTTTTTCTGAGACAGGGTTTCCTCTGTGTAGCTCTGGATGTTCTGGAACTCTTAGACCAGGCTGGCCTCAAACTCAGAGATCTACCTGCCTCTACCTGCACCACCACCACTGGTTACAATTCATTCATTCATTCATCCATTCATTCTTCTTCTCCTCCTCCTCCTCCTTCCTTTCCCTCTCCTTCTCCTTTTCAAAGATAATATATATATATATATATATATATATATATATATATATATATATATATGTGATAGCTGTCTTCAGGCACACCAGAGGAGGGCAGCAGATCCTAGCACAAATGGTTGTGAACCACCATATGGTTGCTGGGAATTGAACTCAGCACCTCTGGAGAGCAGCCAGTGCTCTAACGGCTGATCCATCTCTCCAGCCCTACGACTCATTGTTAAAGTGTACCCCCATGTGTGCGCCCCACACCACCACATGAACTGTAGAATTTCCAGGCTCACAGACACCTCTTTCACTATTTTGCATACTTTTTTGTTTTTTTGGTGGAGTTGGGGAATGATCGATTCTGAGGAGGTCTCTGCACCTTTCTAAATCTGCTTCCAGATCTATAGCATGGGGATAAACGTTCATCTTCTGGGTTTTCATGAGAAGTGGCTGAGACTTGTTTCTAGACTGACTGGGAGGCTGAGGGAGAGGATATGACTCAGGACAGAGAGAGCCCGACTAGTGTGTGAAACCTGAGGCTCCATTTCTAGTTGCGGGAATAAATTGCAAGCGGGTGGCTGGGGAGATGGCTCAGTCACCTGTGTGCTTGCCACGCAAGTACGAGCACCGAGAGCCTGCGTTTAGATGCTTAGCCGCCATGTCAAAATCTACATGTGATGGGCAGCTACTGTAACCCCAGTATTGGGGAAGTAGAGGGAGGAGGAAGTCTGGGCTCAGGTAGTCCAGCTAGTCCACTCTAATGGGTAAGCTCTAGGTTTGGGGAGAGACCTTGTCTCAAAAATAAAGTGGGGACTGAAAAGATGGTCCCCTGGCTAAAAGCTCCTGCAGAGGACTGGGTTTTGATTCTCAGCACCCACCCATCAACTCACAGCTAATTACTTGTATGTAACTCCAATTCCTGGAGATCTGAACCTGTTTCTGACCCCCATCCCACCCCAGGCTCCTACATACACAAGGCACACACTCCTACAGGCTCACACACATACACATAGACAAGAATATATAAATAAACCTTATGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCTAAGGTTCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATCCCCTCTTCTGGTGTGTCTGAGGACAGCTACAGTGTACTTATATGCAATGAATAAATAAATCTTAAAAAAAAAAAACCTTAAAGAAGAAGAAGAAAAGATGGTAACAATAACACATGCAGTGAGGTTGTTTTGTTTCTAAATCAAATCCAGGGTCTCACACGTGCTAAGCCTGTGCTTTACCTCAGAGCTATGCCCTCACACCCCAACGGCTCTTCTTGGGCAGGCTGTCACCCCAGCATTTAAAGTTCTGATTAGCTTCCTCTCTCTCACAG
Seq C2 exon
ACCTAGAGAAGGGACTCCTGAAAGCCCTGAAGGTTCTAGACAATTACTTGACATCCCCCCTCCCGGAAGAAGTGGATGAAACCAGCGCCGAGGATGAGGGCATCTCTCAGAGGAAGTTTCTGGATGGCAATGAGCTCACCCTGGCTGACTGCAACCTGCTGCCAAAGCTTCACATAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029682:ENSRNOT00000068435:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.197
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=PU(5.6=13.5)
A:
NA
C2:
PF134101=GST_C_2=FE(66.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]