RnoINT0037297 @ rn6
Intron Retention
Gene
ENSRNOG00000026870 | Clic6
Description
chloride intracellular channel 6 [Source:RGD Symbol;Acc:727938]
Coordinates
chr11:32686990-32687741:+
Coord C1 exon
chr11:32686990-32687099
Coord A exon
chr11:32687100-32687615
Coord C2 exon
chr11:32687616-32687741
Length
516 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
TGTTCTCTCCTCCTATCTAGGAA
3' ss Score
11.38
Exon sequences
Seq C1 exon
GCTGGCTCTGATGGAGAGAGCATCGGAAACTGCCCATTCTCACAGCGTCTCTTTATGATCCTCTGGCTAAAGGGTGTTATATTCAATGTGACAACGGTGGACCTGAAACG
Seq A exon
GTGAGATGGGGTTTCTGTGTCATTGATGAAATTGGGCCTAATTCCCTGTATGCAGCAACATGCCCTTACATGTATACAAGCATGCATGTACACACAAAACACGCTCATATACACTGTTGGGACCATGGCATATGATGATATGTCCATCCTTAGGAGTCTGGAATGAAACCCAAGGTCCAGCCAAGCAGTATGGTTCCTAGAGCACTCAGGGGCTGCAGTCAGAAAGGGGTAGGGGTTGGGGGCCAGGGAGAGCCTGCTGTCCCTTCAAGCACCCTGCCTGAGCACTGGTCTGGGCTGATAACACTGGGGAGCGATTCCCATCACTGTAGCCAGCCACCCGTCATTTGTTAGTGAGTTCCTTGGCCTTAGTCTCCAGCAAGCTACCTTATTAATTCACAAACCACTTAGAAATTTTCAAGGACTGTATCTCTTAAATGATGAGGTCACAACTAAGCCTTGTCTGTGATTCCAAGTGCTTGAGACCGTCCATGCAGAGTGTTCTCTCCTCCTATCTAG
Seq C2 exon
GAAGCCTGCAGACCTGCAGAACCTGGCTCCTGGGACCAACCCTCCTTTCATGACTTTTGATGGTGAAGTCAAGACAGATGTGAATAAGATTGAGGAGTTCTTAGAGGAGAAGTTAGTCCCCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026870:ENSRNOT00000034383:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.504
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
NA
C2:
PF134171=GST_N_3=FE(57.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATGGAGAGAGCATCGGA
R:
GGGGGACTAACTTCTCCTCTAAGA
Band lengths:
226-742
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]