BtaINT0000382 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BAI4]
Coordinates
chr1:137834-138984:-
Coord C1 exon
chr1:138875-138984
Coord A exon
chr1:137960-138874
Coord C2 exon
chr1:137834-137959
Length
915 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGCCCTTCCCCCCTGCCCAGGAA
3' ss Score
9.83
Exon sequences
Seq C1 exon
GCTGGCTGTGATGGTGAGAGTATTGGAAATTGCCCATTTTCTCAGCGTCTCTTTATGATTCTCTGGCTAAAGGGTGTTATATTTAATGTGACAACAGTGGACTTGAAAAG
Seq A exon
GTAAGACCAGGTTTCTACAGTATTGAAATAACTATCCCCAATTCCCTATACACACAGGCACACAGAGAGACACCCAGGCAGACACATACAGACACACAGGCACAGGCACACACACAGAGATGGAGACACACATACACACAGACATACAGACACAGGCACATACACAGACCCAAATACAGACACAAACACACAGACACACACACACAAACACTGAGACAAAGACACGCACAGAGGCACACAGAAACACATACACACAGGCGTGCACACACACACACAGATGGAGACATACAGACATAGGCACATACACAGACACAACACACAGACACACATACACACACAGAGACAGACAGGCACAGAGGCACACAGACACACAGGTGCACATGCACAGATGGAGACATACAGACACAGGCGCATACACAGACACACACACACACATACACACACAGACGGAACACACAGAGACAGAAACACATGGGTACACGCATGCACACTCCTAGGACCCGTGGGCCCTGTCCCGGGCATATCCACCCTGGGTCAAGACCCTGGATTGGAGCGGGAGTACGTGGGCCACAGAGTTATTACAGGATGGGGTCAGATGTAACCTGAAAGGAGTAGGAGGAGGGGAACCGGGAGGAGCCTGCCCACCCCGTGACTGGTCAGCCGTGACTCTCTCTGGAGCCTGCCTGAGCCCCGCTCCTGGCTGATAACACTGGGGAGGGTTAACTTTTCAGCCTCGTCTCCAGATAAAGGGCCACACTTTCCTTGCCAGTGGGACAGTTTGTAAACTCCCAGTTGCCTTTGAAATTCTCAAGGGTGGTTTCTCTTCCACTGTTGTGTGTATGTGTGTGTGTCGGGGGGCCTGGTTAAGCCTTGGCAATGATCCCAACCCTGGCACTGCCCTTCCCCCCTGCCCAG
Seq C2 exon
GAAACCTGCGGACCTGCAGAACTTGGCTCCCGGCACCAATCCACCTTTCATGACTTTTGATGGCGAAGTCAAGACAGATGTGAATAAGATCGAGGAGTTCTTAGAGGAGAAATTGGCTCCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001753:ENSBTAT00000002299:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.535
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
NA
C2:
PF134171=GST_N_3=FE(57.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTGTGATGGTGAGAG
R:
GGGGAGCCAATTTCTCCTCTA
Band lengths:
232-1147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development