BtaEX0000096 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BAI4]
Coordinates
chr1:137158-138984:-
Coord C1 exon
chr1:138875-138984
Coord A exon
chr1:137834-137959
Coord C2 exon
chr1:137158-137264
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGCCCTTCCCCCCTGCCCAGGAA
3' ss Score
9.83
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCTGGCTGTGATGGTGAGAGTATTGGAAATTGCCCATTTTCTCAGCGTCTCTTTATGATTCTCTGGCTAAAGGGTGTTATATTTAATGTGACAACAGTGGACTTGAAAAG
Seq A exon
GAAACCTGCGGACCTGCAGAACTTGGCTCCCGGCACCAATCCACCTTTCATGACTTTTGATGGCGAAGTCAAGACAGATGTGAATAAGATCGAGGAGTTCTTAGAGGAGAAATTGGCTCCCCCAAG
Seq C2 exon
GTACCCTAAGCTGGGAACCCAACACCCTGAATCTAACTCTGCTGGAAATGACGTGTTTGCCAAGTTCTCAGCATTTATAAAAAACACCAAGAAGGATGCAAATGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001753_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.535 C2=0.270
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
PF134171=GST_N_3=FE(57.5=100)
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(7.6=18.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTGTGATGGTGAGAG
R:
TCTCATTTGCATCCTTCTTGGTGT
Band lengths:
217-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development