DreEX6047119 @ danRer10
Exon Skipping
Gene
ENSDARG00000070584 | clic5b
Description
chloride intracellular channel 5b [Source:ZFIN;Acc:ZDB-GENE-040426-2542]
Coordinates
chr20:44053517-44064053:+
Coord C1 exon
chr20:44053517-44053626
Coord A exon
chr20:44062845-44062970
Coord C2 exon
chr20:44063947-44064053
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTGTTTATTTTTTTTCGCAGGAA
3' ss Score
10.84
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GCTGGCAGTGATGGCGAGAGCATCGGAAACTGTCCGTTTTCTCAGCGCCTCTTCATGATCCTCTGGCTCAAAGGTGTAGTTTTTAATGTCACCACTGTCGACCTCAAGAG
Seq A exon
GAAACCAGCTGATTTGCACAATTTGGCTCCAGGCACTCATCCTCCTTTCCTGACCTTCAACGGTGAGGTGAAGACAGACGTTAACAAGATTGAGGAGTTCCTGGAGGAGGTTTTGGCACCACCAAA
Seq C2 exon
GTACCCCAAACTTGCAGCCAGGCACAGGGAGTCAAACGCAGCAGGGAATGACATATTTGCAAAGTTCTCGGCTTTCATAAAAAACACGAAGCCAGATGCGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070584-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.180 C2=0.108
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(8.3=25.6)
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(27.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGTGATGGCGAGAG
R:
ATTCGCATCTGGCTTCGTGTT
Band lengths:
212-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]