RnoEX0021779 @ rn6
Exon Skipping
Gene
ENSRNOG00000026870 | Clic6
Description
chloride intracellular channel 6 [Source:RGD Symbol;Acc:727938]
Coordinates
chr11:32686990-32689160:+
Coord C1 exon
chr11:32686990-32687099
Coord A exon
chr11:32687616-32687741
Coord C2 exon
chr11:32689054-32689160
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTCCTCCTATCTAGGAA
3' ss Score
11.38
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GCTGGCTCTGATGGAGAGAGCATCGGAAACTGCCCATTCTCACAGCGTCTCTTTATGATCCTCTGGCTAAAGGGTGTTATATTCAATGTGACAACGGTGGACCTGAAACG
Seq A exon
GAAGCCTGCAGACCTGCAGAACCTGGCTCCTGGGACCAACCCTCCTTTCATGACTTTTGATGGTGAAGTCAAGACAGATGTGAATAAGATTGAGGAGTTCTTAGAGGAGAAGTTAGTCCCCCCGAG
Seq C2 exon
GTACCCTAAGCTGGGAACCCAACACCCCGAATCCAACTCAGCGGGAAATGACGTTTTTGCCAAATTCTCAGCGTTTATTAAGAACACCAAGAAGGATGCAAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026870-'4-5,'4-3,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.504 C2=0.243
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
PF134171=GST_N_3=FE(57.5=100)
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(11.1=24.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATGGAGAGAGCATCGGA
R:
TGTCATTTGCATCCTTCTTGGTGT
Band lengths:
211-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]