DreEX6052491 @ danRer10
Exon Skipping
Gene
ENSDARG00000075993 | clic5a
Description
chloride intracellular channel 5a [Source:ZFIN;Acc:ZDB-GENE-041114-84]
Coordinates
chr17:5414489-5416414:-
Coord C1 exon
chr17:5416305-5416414
Coord A exon
chr17:5415972-5416097
Coord C2 exon
chr17:5414489-5414595
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTCTTTTTCTTCCAGGAA
3' ss Score
12.64
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GCTGGCAGTGATGGAGAAAGTATCGGGAACTGTCCATTCTCCCAAAGGCTTTTTATGATCCTGTGGCTGAAGGGAGTCGTGTTCAATGTCACCACTGTTGATCTGAAAAG
Seq A exon
GAAACCAGCTGATCTTCATAATCTGGCTCCTGGAACGCCTCCACCATTTCTAACATTCAACGGAGAGGTGCGGACAGATGTCAACAAGATCGAGGAGTTTCTAGAGGAGATGCTCGCGCCTCCCAA
Seq C2 exon
GTATCCTAAACTGGCGGCAAAGAACAAGGAGTCAAACACAGCGGGAAATGACATCTTCGCAAAGTTCTCCGCTTACATCAAGAACACGAAGCCAGAAGCCAACGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075993-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.256 C2=0.189
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(14.2=46.5)
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(25.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCAGTGATGGAGAAAGT
R:
GGCTTCTGGCTTCGTGTTCTT
Band lengths:
210-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]