GgaEX6004303 @ galGal4
Exon Skipping
Gene
ENSGALG00000016020 | CLIC6
Description
chloride intracellular channel 6 [Source:HGNC Symbol;Acc:HGNC:2065]
Coordinates
chr1:105365626-105367492:+
Coord C1 exon
chr1:105365626-105365735
Coord A exon
chr1:105366187-105366312
Coord C2 exon
chr1:105367386-105367492
Length
126 bp
Sequences
Splice sites
3' ss Seq
AACCTCCTTTCTACCTCTAGAAA
3' ss Score
9.42
5' ss Seq
CCGGTACAG
5' ss Score
5.65
Exon sequences
Seq C1 exon
GCTGGCAGCGATGGGGAAAGTATTGGAAACTGCCCGTTCTCGCAGCGTCTCTTTATGATCCTGTGGCTAAAGGGTGTCATATTTAATGTCACAACCGTGGACTTGAAAAG
Seq A exon
AAAACCTGCTGACCTGCAGAACCTGGCCCCGGGGACGAACCCACCCTTCATGACGTTTGATGGCGAAGTCAAAACTGACGTCAATAAGATTGAGGAGTTCTTGGAAGAAAAGCTAGCGCCGCCCCG
Seq C2 exon
GTATCCCAAACTCGCACCGAAGCACCCCGAGTCCAACTCTGCAGGAAACGATGTGTTTGCAAAATTCTCTGCATTCATCAAGAACCCAAGAAAAGATGCTAATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016020-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.163 C2=0.216
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
PF134171=GST_N_3=FE(57.5=100)
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(20.9=62.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCGATGGGGAAAGTATT
R:
TCATTAGCATCTTTTCTTGGGTTCT
Band lengths:
212-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]