MmuEX0011684 @ mm10
Exon Skipping
Gene
ENSMUSG00000022949 | Clic6
Description
chloride intracellular channel 6 [Source:MGI Symbol;Acc:MGI:2146607]
Coordinates
chr16:92528060-92529975:+
Coord C1 exon
chr16:92528060-92528169
Coord A exon
chr16:92528696-92528821
Coord C2 exon
chr16:92529869-92529975
Length
126 bp
Sequences
Splice sites
3' ss Seq
CGTTCCTCCCTCCTATCTAGGAA
3' ss Score
11.06
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GCTGGTTATGACGGCGAGAGCATCGGAAACTGCCCATTTTCACAGCGTCTCTTTATGATCCTCTGGCTAAAGGGTGTTATATTCAATGTGACAACGGTGGACCTAAAACG
Seq A exon
GAAGCCTGCAGACCTTCAGAACCTGGCTCCTGGGACGAACCCTCCTTTCATGACTTTTGATGGTGAAGTCAAGACAGATGTGAATAAAATTGAGGAGTTCTTAGAGGAGAAGTTAGTTCCCCCGAG
Seq C2 exon
GTACCCTAAGCTGGGAACTCAGCACCCTGAGTCCAACTCAGCGGGAAATGATGTTTTTGCCAAATTCTCAGCATTTATTAAAAACACCAAGAAGGATGCAAATGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022949_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.434 C2=0.216
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
PF134171=GST_N_3=FE(57.5=100)
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(12.4=32.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTTATGACGGCGAGAG
R:
TCTCATTTGCATCCTTCTTGGTGT
Band lengths:
217-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types