RnoINT0044255 @ rn6
Intron Retention
Gene
ENSRNOG00000042367 | Cyp2ab1
Description
cytochrome P450, family 2, subfamily ab, polypeptide 1 [Source:RGD Symbol;Acc:1586963]
Coordinates
chr11:84509502-84510636:+
Coord C1 exon
chr11:84509502-84509643
Coord A exon
chr11:84509644-84510448
Coord C2 exon
chr11:84510449-84510636
Length
805 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CCTCACTGAGCTGTCCGCAGAGA
3' ss Score
3.5
Exon sequences
Seq C1 exon
GCCATGGATGACCCTGTCTCCACATTCAGTGAGGAGAACCTTATCCAAGTGGTGATTGACCTATTTCTGGGAGGCACAGACACCACGGCCACCACTCTGCACTGGGCAATCATATACCTGGTCCATCACAGAGCCATCCAAG
Seq A exon
GTATGGGACCCTCAGTTAGTCCCTAGTCTGTTAGTCCCCAGGGGGCTCCAGGTACCGTGCACCCATCACTCTGTACTTTGAGCATGGAGGAAAACCTGTTCTTATCTCCGCGGCTCAGGAACCTGGCAGATTTGAGTTAGAAAGGAGGGATTTTAAGCTCCCAGCCTGTGACTCGCTACATGACCGTAGGAAATCATTCTTCCTCTCAGAACTGGCAGCTGGGAGGTGTGGTTCCACTCATTCAGTAATGACTCAGCACCTACTAAGTGCCAGGCCCTGGGATAACGATAAGAACACAGTTGTGGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAGAACACAGTTGTGAGGAACAAAAGTATCTGGAGTTCTCTAAGGGACAAAATGGCTACAACCAGCTCCAGTTCTGTGAGGCCCTAAGTACATTTTCTGTAGAGCCTTCGTTTTCTCATACATCAAACGAAGACGGTAGTCCCCAGGCTGTGAGACTCACGACGAGGTCTTTTCCCTTCTCATAACCTCTCCATATAGGAGTGAACCTTACAGAGAGGCAAATTCTCTCTCCTGTGAAACAGCTGGTGGTGGGGCGGGGGCATGACCTAGGTCTGGGAACTTTAGCAGCGGTCTCTAGGTAGGAAACGGAATAGCTGGTGCGGTGGGGCCGGGTGGTGTTGGGGAGGCTGGGCCACAGGCACCATCCCAAGACCCTCACTGAGCTGTCCGCAG
Seq C2 exon
AGAGAGTGCAGCAGGAACTGGATGAGGTGCTGGGTACTGCACAGGCCGTCTGCTATGAGGATCGAGAGCGACTGCCCTACACCCGTGCTGTCCTCCACGAGGTACAGCGCCTTAGCAGCGTTGTGGCCGTGGGCGCTGTACGTCAGTGTGTGACTCCCACCTGGATGCATGGTTACTATGTATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042367:ENSRNOT00000066953:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.6=100)
A:
NA
C2:
PF0006717=p450=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGATGACCCTGTCTCCA
R:
AGATACATAGTAACCATGCATCCAGG
Band lengths:
326-1131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]